Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.8e-73 277.3 150 100.0
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 3.3e-51 205.3 151 74.2
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.2e-45 186.8 151 69.5
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.1e-45 186.0 153 69.9
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 8.7e-44 180.6 135 72.6
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 3.3e-43 178.7 147 66.0
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 3.3e-43 178.7 151 62.3
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 4.3e-43 178.3 149 63.1
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 7.3e-43 177.6 151 63.6
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 9.6e-43 177.2 150 67.3
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.3e-42 176.8 144 69.4
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 8.1e-42 174.1 151 63.6
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 8.1e-42 174.1 150 63.3
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 1.8e-41 172.9 151 63.6
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 5.3e-41 171.4 151 64.2
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 6.9e-41 171.0 150 65.3
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 2.2e-39 166.0 150 60.0
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 3.8e-39 165.2 151 61.6
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 3.8e-39 165.2 151 63.6
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 4.9e-39 164.9 149 59.7
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 1.2e-37 160.2 152 59.9
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.7e-37 159.1 150 58.7
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.5e-37 158.7 146 59.6
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 4.6e-37 158.3 151 58.9
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 6.0e-37 157.9 151 58.9
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 7.9e-37 157.5 151 58.3
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 7.9e-37 157.5 151 58.3
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.0e-36 157.1 152 57.2
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-35 153.3 152 55.9
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.5e-35 152.5 149 57.0
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.5e-35 152.5 147 57.8
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 4.3e-35 151.8 152 56.6
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.6e-35 151.4 151 55.0
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.4e-35 151.0 152 55.3
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 7.4e-35 151.0 141 61.0
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.6e-35 150.6 150 56.0
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.3e-34 150.2 151 58.3
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.1e-34 149.4 152 59.9
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.8e-34 149.1 147 57.8
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 2.8e-34 149.1 151 53.6
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 3.7e-34 148.7 152 59.2
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 4.8e-34 148.3 149 55.7
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 4.8e-34 148.3 153 57.5
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.4e-33 146.7 147 57.1
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 3.1e-33 145.6 147 57.1
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 6.9e-33 144.4 154 57.8
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 9.0e-33 144.1 152 54.6
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.2e-32 143.7 146 55.5
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.5e-32 143.3 153 55.6
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 2.6e-32 142.5 149 53.7
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 3.4e-32 142.1 135 58.5
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 9.9e-32 140.6 149 53.0
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.7e-31 139.8 148 52.0
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.9e-31 138.3 151 53.0
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 4.9e-31 138.3 152 55.9
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 1.1e-30 137.1 151 52.3
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.4e-30 136.7 151 55.6
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 5.5e-30 134.8 153 54.9
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 7.1e-30 134.4 148 56.1
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.1e-29 132.9 150 54.0
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 1.0e-28 130.6 148 56.1
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.3e-28 130.2 140 54.3
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 3.9e-28 128.6 147 53.7
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 5.1e-28 128.3 147 50.3
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 6.7e-28 127.9 147 52.4
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.3e-26 123.6 159 47.2
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.6e-26 123.2 151 52.3
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 2.8e-26 122.5 136 50.7
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 4.8e-26 121.7 151 49.0
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 6.2e-26 121.3 154 48.1
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 2.4e-25 119.4 151 49.7
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 3.1e-25 119.0 146 50.7
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 4.0e-25 118.6 151 49.7
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 2.0e-24 116.3 151 49.0
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.0e-24 116.3 151 51.7
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.0e-24 116.3 150 49.3
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 3.4e-24 115.5 148 51.4
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 7.6e-24 114.4 150 52.7
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.7e-23 113.2 151 47.7
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 2.9e-23 112.5 150 48.7
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 2.9e-23 112.5 150 48.0
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 8.4e-23 110.9 149 49.0
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 3.2e-22 109.0 147 47.6
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 3.2e-22 109.0 149 49.7
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 4.2e-22 108.6 148 48.0
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 5.5e-22 108.2 151 45.0
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.2e-21 107.1 133 51.1
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 2.1e-21 106.3 146 49.3
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 7.9e-21 104.4 151 47.7
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.0e-20 104.0 149 47.0
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.8e-20 103.2 154 46.1
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 2.3e-20 102.8 147 47.6
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 6.7e-20 101.3 150 42.7
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.1e-19 100.5 147 46.9
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.1e-19 100.5 134 47.0
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 4.3e-19 98.6 160 46.9
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 3.7e-18 95.5 150 45.3
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 3.7e-18 95.5 150 45.3
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 8.2e-18 94.4 136 45.6
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.4e-17 93.6 150 44.7
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-17 93.6 150 44.0
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 5.3e-17 91.7 115 49.6
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 5.3e-17 91.7 150 44.0
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-16 90.1 150 44.0
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 2.0e-16 89.7 152 44.1
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 2.6e-16 89.4 138 42.8
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 5.0e-15 85.1 149 45.0
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 5.0e-15 85.1 149 45.0
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 6.5e-15 84.7 149 45.0
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 6.5e-15 84.7 155 43.2
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.4e-14 83.6 149 45.0
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.4e-14 83.6 150 44.7
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.5e-14 82.8 149 44.3
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 3.2e-14 82.4 149 44.3
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 3.2e-14 82.4 154 43.5
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.2e-14 82.0 101 47.5
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 5.5e-14 81.6 86 51.2
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-13 80.1 152 42.8
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 3.0e-12 75.9 156 39.1
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 1.9e-11 73.2 155 39.4
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 4.8e-10 68.6 154 39.0
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 3.1e-09 65.9 139 40.3


User provided reference genes

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