Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 0.0e+00 1199.5 610 100.0
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.8e-297 1025.4 612 84.6
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 8.3e-295 1016.5 611 83.1
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.2e-285 986.1 689 74.7
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 5.3e-273 944.1 614 77.7
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.8e-268 929.1 621 76.3
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 6.7e-268 927.2 611 76.4
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.9e-267 925.6 615 76.4
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 2.5e-267 925.2 616 76.1
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.8e-266 921.0 627 74.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 6.2e-266 920.6 614 75.2
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.4e-265 919.5 613 74.9
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 2.2e-263 912.1 614 75.1
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.1e-262 909.8 614 75.1
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 4.2e-262 907.9 613 74.6
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.2e-261 906.4 614 75.4
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 1.0e-260 903.3 617 73.6
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 5.1e-260 901.0 615 73.0
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 8.7e-260 900.2 616 73.2
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.1e-259 899.8 615 75.1
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.9e-259 899.0 619 74.6
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 5.6e-259 897.5 613 73.2
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.4e-257 892.9 618 73.9
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.8e-257 892.5 617 72.8
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 9.0e-257 890.2 612 73.9
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.0e-255 886.7 624 72.4
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.3e-255 886.3 612 73.5
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.7e-255 885.9 617 72.6
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.9e-255 885.2 617 74.4
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.9e-255 885.2 617 74.2
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.9e-255 885.2 617 74.2
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.8e-255 884.8 614 73.1
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 4.9e-255 884.4 614 73.1
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 4.9e-255 884.4 617 72.6
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 6.5e-255 884.0 615 72.2
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.4e-254 882.9 615 71.9
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 3.2e-254 881.7 612 72.5
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 3.5e-253 878.2 616 71.1
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.6e-253 877.9 612 71.2
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 6.0e-253 877.5 614 72.3
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.0e-252 876.7 615 73.0
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.0e-252 876.7 612 72.2
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 1.8e-252 875.9 614 72.5
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 6.7e-252 874.0 613 71.8
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 6.7e-252 874.0 612 72.1
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.1e-251 873.2 615 72.7
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 4.3e-251 871.3 612 72.4
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.1e-249 864.8 614 70.5
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 5.9e-248 860.9 614 71.7
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 7.7e-248 860.5 595 72.1
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 2.9e-247 858.6 611 70.5
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 7.2e-246 854.0 612 70.8
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 7.2e-246 854.0 610 69.7
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.0e-244 850.1 612 71.2
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 1.8e-244 849.4 748 62.4
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.8e-242 842.0 614 69.5
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 4.8e-242 841.3 610 69.8
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.1e-241 840.1 603 70.0
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.0e-240 835.9 615 68.9
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.0e-239 833.6 611 70.0
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 3.8e-239 831.6 611 68.1
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 6.5e-239 830.9 612 67.8
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 8.5e-239 830.5 604 70.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.7e-237 825.5 570 73.3
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 3.6e-237 825.1 612 67.5
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 1.1e-235 820.1 611 66.9
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.5e-235 819.7 615 67.6
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 6.3e-234 814.3 612 67.0
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 8.2e-234 813.9 612 67.0
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 8.2e-234 813.9 612 67.0
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 1.8e-233 812.8 612 67.0
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 9.1e-233 810.4 612 66.5
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 9.1e-233 810.4 565 70.6
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 3.5e-232 808.5 612 67.0
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 4.5e-232 808.1 613 66.6
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.5e-232 808.1 596 70.1
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 7.7e-232 807.4 612 65.5
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 6.5e-231 804.3 596 70.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 4.2e-230 801.6 578 72.5
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 5.5e-230 801.2 615 66.3
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 7.2e-230 800.8 613 66.1
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 7.2e-230 800.8 615 66.3
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 3.6e-229 798.5 615 67.5
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.4e-225 786.6 549 73.0
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 5.3e-225 784.6 547 73.1
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 2.7e-221 772.3 613 63.6
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 7.0e-209 731.1 685 61.3
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 9.1e-209 730.7 611 63.2
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.5e-208 728.4 618 63.3
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 3.3e-206 722.2 500 74.0
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.6e-195 686.0 623 58.1
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 9.2e-193 677.6 497 72.0
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 9.5e-190 667.5 615 59.0
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.5e-171 607.1 617 54.8
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.2e-170 603.2 677 48.0
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.3e-159 567.4 358 78.8
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 5.8e-155 552.0 503 57.5
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 2.2e-154 550.1 387 73.1
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 9.3e-153 544.7 384 71.9
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 6.2e-149 531.9 360 75.6
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 1.8e-135 487.3 360 71.1
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 1.3e-125 454.5 438 57.3
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-117 427.6 391 60.6
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.7e-117 427.6 321 69.5
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.7e-114 417.5 256 82.0
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.7e-112 410.2 257 78.2
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 1.8e-111 407.5 257 79.4
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.5e-110 404.4 644 39.9
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 9.4e-97 358.6 244 73.4
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 7.5e-94 349.0 231 76.2
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 9.8e-86 322.0 634 35.2
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 1.2e-80 305.1 178 82.0
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 7.3e-73 279.3 218 66.5
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-71 273.9 214 66.8
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.0e-58 230.7 172 69.2
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 2.3e-50 204.5 157 63.7
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 5.8e-46 189.9 111 82.0
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 7.6e-46 189.5 110 81.8
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 4.9e-45 186.8 110 80.9
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 3.2e-44 184.1 109 80.7
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 4.2e-44 183.7 111 81.1
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 3.0e-42 177.6 111 77.5
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-42 177.2 134 70.1
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-36 159.1 129 63.6
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 4.6e-35 153.7 104 69.2
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 2.8e-32 144.4 99 71.7
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 8.1e-32 142.9 129 60.5
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 6.5e-29 133.3 82 75.6
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 8.4e-29 132.9 82 76.8
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 3.2e-28 131.0 134 56.7
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 8.2e-24 116.3 512 24.8
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-23 115.5 69 81.2
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 6.9e-23 113.2 81 61.7
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 6.9e-23 113.2 81 61.7
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-22 112.5 71 71.8
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 7.6e-22 109.8 83 61.4
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 6.5e-21 106.7 65 78.5
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-18 97.4 55 74.5
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 8.7e-18 96.3 146 45.9
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-14 85.9 55 76.4
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.2e-12 77.8 51 76.5
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 4.6e-11 73.9 41 80.5
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-10 72.4 40 77.5
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 3.9e-10 70.9 41 78.0
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 3.3e-09 67.8 41 70.7
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.8e-08 64.7 45 68.9
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 1.1e-07 62.8 51 62.7
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 7.7e-06 56.6 46 60.9


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