Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.4e-131 470.3 230 100.0
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.4e-115 417.2 230 89.1
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-109 399.8 230 86.1
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.2e-102 375.9 192 95.3
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 8.2e-102 374.0 230 79.1
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 1.6e-97 359.8 230 76.5
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 7.4e-95 350.9 230 73.5
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.8e-94 348.2 220 80.9
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 2.0e-92 342.8 230 70.9
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 9.4e-90 334.0 226 69.9
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.2e-89 333.6 230 69.6
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 2.1e-89 332.8 229 68.1
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.1e-89 331.3 230 69.6
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.8e-88 329.7 230 68.7
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.8e-88 329.7 230 70.4
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 4.4e-87 325.1 230 70.0
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.3e-86 323.6 226 68.1
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 3.7e-86 322.0 230 68.3
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.4e-85 320.1 230 67.8
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.8e-85 319.7 230 68.7
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.4e-85 319.3 230 68.3
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 4.1e-85 318.5 230 68.3
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 9.1e-85 317.4 228 68.9
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 2.0e-84 316.2 230 67.8
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 3.5e-84 315.5 226 67.3
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 3.5e-84 315.5 225 67.6
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 4.5e-84 315.1 227 64.8
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 5.9e-84 314.7 230 67.4
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 2.9e-83 312.4 230 67.0
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 3.8e-83 312.0 226 65.5
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 5.0e-83 311.6 230 66.1
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 5.0e-83 311.6 230 67.0
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 1.5e-82 310.1 228 63.2
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 3.2e-82 308.9 221 67.0
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 5.5e-82 308.1 227 66.1
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.6e-81 306.6 231 64.9
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 2.1e-81 306.2 229 64.6
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 4.7e-81 305.1 230 63.9
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.4e-80 303.5 228 66.2
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 4.0e-80 302.0 227 62.6
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 5.2e-80 301.6 227 61.7
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 5.2e-80 301.6 226 64.2
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 6.7e-80 301.2 230 63.0
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 8.8e-80 300.8 230 65.2
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 8.8e-80 300.8 227 63.9
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 8.8e-80 300.8 230 66.5
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 4.4e-79 298.5 231 66.7
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 7.5e-79 297.7 227 63.9
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-78 296.6 230 63.5
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.7e-78 296.6 230 64.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.8e-78 295.8 228 62.3
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 4.8e-78 295.0 227 62.1
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.3e-78 294.7 230 63.5
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.4e-77 293.5 227 65.2
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 2.4e-77 292.7 230 64.8
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 3.1e-77 292.4 227 62.1
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.3e-77 291.6 227 65.2
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.6e-76 290.0 230 62.2
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.6e-76 290.0 227 65.2
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.6e-76 290.0 227 64.8
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.6e-76 290.0 227 65.2
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 3.5e-76 288.9 227 60.4
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 4.5e-76 288.5 228 63.6
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 5.9e-76 288.1 228 63.2
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 7.7e-76 287.7 227 60.8
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 9.4e-74 280.8 227 60.8
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.4e-72 276.9 226 62.4
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 5.2e-72 275.0 228 59.6
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.0e-71 273.1 230 58.7
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 6.3e-70 268.1 225 58.2
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.8e-69 266.5 227 58.6
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 2.4e-69 266.2 230 56.1
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 4.1e-69 265.4 224 59.8
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 7.7e-68 261.2 205 62.9
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.0e-67 260.8 201 64.2
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 2.9e-67 259.2 231 57.6
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 4.2e-66 255.4 219 57.5
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.6e-65 253.4 227 55.1
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.6e-65 253.4 209 60.3
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 4.7e-65 251.9 220 56.8
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 6.1e-65 251.5 220 55.9
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.1e-65 251.5 226 61.5
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 6.1e-65 251.5 226 55.8
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.4e-64 250.4 222 55.9
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.4e-64 250.4 230 55.2
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.8e-64 250.0 222 56.3
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.8e-64 250.0 229 55.0
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 2.3e-64 249.6 229 55.0
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 5.2e-64 248.4 227 54.6
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 3.4e-63 245.7 229 54.6
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 4.4e-63 245.4 222 55.4
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 7.5e-63 244.6 220 57.3
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.4e-61 240.4 221 54.8
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 3.5e-60 235.7 230 53.0
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.9e-59 232.3 231 60.6
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 5.0e-59 231.9 222 52.7
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 6.6e-59 231.5 220 53.2
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 6.6e-59 231.5 223 54.3
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.6e-59 231.1 231 60.2
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.1e-58 230.7 246 47.2
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 3.6e-57 225.7 237 48.1
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 4.0e-56 222.2 237 47.7
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 6.8e-56 221.5 226 50.9
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.4e-53 213.0 222 50.5
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 3.2e-53 212.6 144 71.5
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 7.8e-52 208.0 238 46.2
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.3e-50 202.6 250 44.8
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.3e-50 202.6 228 46.1
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.7e-49 198.7 249 45.0
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 2.3e-48 196.4 259 42.1
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 5.8e-47 191.8 222 46.8
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 5.8e-47 191.8 237 43.0
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 7.5e-47 191.4 243 44.4
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 9.8e-47 191.0 232 41.8
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.4e-45 186.4 223 41.3
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.1e-45 185.7 225 45.3
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 7.0e-45 184.9 229 43.7
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.6e-44 183.7 226 45.1
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.5e-44 182.6 224 41.5
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 3.0e-43 179.5 223 43.0
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 6.6e-43 178.3 227 41.0
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 3.3e-42 176.0 249 37.8
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 2.1e-41 173.3 258 38.4
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.7e-41 172.2 260 38.8
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.8e-40 170.2 260 39.2
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 3.1e-40 169.5 231 42.4
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 5.2e-40 168.7 152 55.9
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 7.5e-39 164.9 175 47.4
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 7.5e-39 164.9 175 47.4
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.3e-38 164.1 254 37.4
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.6e-36 157.1 224 38.8
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 2.7e-36 156.4 194 42.3
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 2.3e-35 153.3 315 32.1
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 3.0e-35 152.9 216 40.7
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 3.9e-35 152.5 246 37.4
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.1e-35 152.1 318 33.0
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 4.3e-34 149.1 213 38.0
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.3e-34 149.1 210 37.1
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.6e-33 147.1 137 52.6
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 2.1e-33 146.7 154 48.1
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 2.1e-33 146.7 226 38.5
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 3.6e-33 146.0 160 46.2
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 4.7e-33 145.6 224 38.8
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 4.7e-33 145.6 150 49.3
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 6.2e-33 145.2 131 53.4
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-32 144.1 315 31.4
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 8.9e-32 141.4 178 44.9
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 2.9e-30 136.3 205 38.0
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 4.6e-28 129.0 141 48.9
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 3.9e-27 125.9 106 56.6
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 6.2e-25 118.6 147 43.5
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 1.4e-24 117.5 115 53.0
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 5.3e-24 115.5 139 43.9
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 9.0e-24 114.8 139 41.7
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.9e-22 109.0 219 30.1
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.2e-20 104.4 103 48.5
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.7e-19 100.5 220 34.1
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 6.6e-19 98.6 180 30.0
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.3e-18 95.1 83 54.2
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.8e-16 90.5 160 35.6
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.9e-14 82.4 95 42.1
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.4e-13 79.0 169 31.4
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 3.0e-11 73.2 244 27.5
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.8e-09 66.6 62 48.4
Rhsim07G0211800 Rhododendron simsii HOM05D001292 ORTHO05D001202 1.4e-08 64.3 182 30.2
Potri.005G155600 Populus trichocarpa HOM05D001292 ORTHO05D001202 3.4e-07 59.7 253 23.7
Potri.002G105700 Populus trichocarpa HOM05D001292 ORTHO05D001202 1.0e-06 58.2 253 24.1
Sabra02G0083000 Salix brachista HOM05D001292 ORTHO05D001202 1.7e-06 57.4 254 24.0
COL.COLO4_35242 Corchorus olitorius HOM05D001292 ORTHO05D001202 2.9e-06 56.6 201 24.4
LjContig00408g0003702 Lotus japonicus HOM05D001292 ORTHO05D001202 3.8e-06 56.2 199 25.1
Phvul.009G037600 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 3.8e-06 56.2 198 23.2
VMungo1309G1057 Vigna mungo HOM05D001292 ORTHO05D001202 3.8e-06 56.2 198 23.2
Ciclev10000201m.g Citrus clementina HOM05D001292 ORTHO05D001202 4.9e-06 55.8 252 23.8
TWI12G0821 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 4.9e-06 55.8 199 25.1
BolC4t25531H Brassica oleracea HOM05D001292 ORTHO05D001202 6.4e-06 55.5 189 25.4
Dinv44858 Davidia involucrata HOM05D001292 ORTHO05D001202 6.4e-06 55.5 197 23.9
TWI56G0043 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 6.4e-06 55.5 202 25.7


User provided reference genes

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