Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.0e-304 1049.3 523 100.0
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.5e-288 993.0 524 95.4
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.8e-250 869.0 524 84.2
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.1e-250 868.2 524 84.4
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 8.6e-248 860.1 522 83.1
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 2.5e-247 858.6 524 84.4
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 7.0e-242 840.5 500 84.6
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.5e-236 822.8 577 75.0
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 2.5e-231 805.4 524 80.2
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.7e-227 792.7 519 79.0
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.4e-226 789.6 532 76.3
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 1.9e-226 789.3 491 81.9
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 1.9e-226 789.3 523 76.7
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 1.2e-225 786.6 529 76.9
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 4.6e-225 784.6 462 85.1
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-224 783.1 521 76.4
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.3e-224 783.1 481 82.5
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.7e-224 782.7 475 83.6
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.9e-224 781.6 535 75.1
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 6.6e-224 780.8 532 76.5
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.1e-223 780.0 524 75.6
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 3.3e-223 778.5 523 76.1
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 7.3e-223 777.3 524 75.6
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.6e-222 776.2 498 80.1
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 2.8e-222 775.4 514 76.3
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 4.7e-222 774.6 458 84.3
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.7e-222 774.6 474 81.2
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.4e-221 773.1 520 75.8
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 3.1e-221 771.9 495 79.4
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 8.9e-221 770.4 524 76.7
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 8.9e-221 770.4 533 75.0
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.2e-220 770.0 471 81.7
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 3.4e-220 768.5 485 80.8
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 4.4e-220 768.1 528 75.4
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 5.8e-220 767.7 492 79.5
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 2.4e-218 762.3 519 74.4
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 4.1e-218 761.5 461 81.6
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 5.4e-218 761.1 454 82.8
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 7.1e-218 760.8 527 75.0
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 9.2e-218 760.4 500 78.2
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.6e-217 759.6 507 76.7
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 7.8e-217 757.3 513 76.0
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 7.8e-217 757.3 483 77.6
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.3e-216 756.5 493 78.3
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 1.3e-216 756.5 513 75.8
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.0e-216 755.4 528 73.7
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 5.1e-216 754.6 528 73.9
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 6.6e-216 754.2 521 75.4
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.6e-216 754.2 522 74.3
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 6.6e-216 754.2 523 75.3
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 8.6e-216 753.8 490 78.4
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.1e-215 753.4 505 76.6
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.5e-215 753.1 522 74.3
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 2.5e-215 752.3 515 76.3
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 3.3e-215 751.9 467 80.1
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 5.6e-215 751.1 458 82.3
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 5.6e-215 751.1 493 77.9
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 7.3e-215 750.7 445 84.0
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.8e-214 748.8 523 74.0
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.4e-213 746.5 519 75.0
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 3.1e-213 745.3 427 88.1
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 3.1e-213 745.3 559 70.3
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.2e-213 744.6 449 81.3
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.4e-212 741.9 514 74.9
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 4.4e-212 741.5 428 87.1
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 5.8e-212 741.1 485 77.7
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.9e-211 738.8 437 82.8
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 8.4e-211 737.3 477 78.6
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 8.4e-211 737.3 487 78.4
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.1e-210 736.9 527 71.5
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.1e-210 736.9 527 71.5
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.4e-210 736.5 451 80.9
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.2e-210 734.9 472 78.6
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.1e-210 734.2 440 83.6
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 1.3e-208 729.9 434 83.4
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.7e-208 729.6 473 78.0
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 2.3e-208 729.2 458 79.9
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 3.9e-208 728.4 468 77.6
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 3.9e-208 728.4 457 79.6
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 6.6e-208 727.6 424 84.9
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.1e-207 726.9 454 79.7
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 3.3e-207 725.3 426 83.6
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 7.3e-207 724.2 475 78.1
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 7.3e-207 724.2 432 82.2
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 1.6e-206 723.0 439 82.0
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 2.1e-206 722.6 517 72.0
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.1e-205 720.3 483 74.9
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.1e-205 720.3 551 67.9
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.4e-205 719.9 528 70.6
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 9.0e-205 717.2 555 67.4
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.5e-204 716.5 529 70.1
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 5.8e-204 714.5 489 74.2
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 7.6e-204 714.1 449 78.2
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 4.9e-203 711.4 520 71.3
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 3.2e-202 708.8 528 68.9
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 5.4e-202 708.0 458 78.4
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.2e-201 706.8 426 81.7
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 6.0e-201 704.5 431 81.2
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 6.0e-201 704.5 517 71.6
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 6.0e-201 704.5 428 82.0
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.3e-200 703.4 457 78.1
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 1.3e-200 703.4 521 70.8
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 8.7e-200 700.7 520 70.6
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.1e-199 700.3 462 77.7
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.5e-199 699.9 435 80.2
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.3e-199 698.7 426 81.9
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 8.1e-198 694.1 520 69.8
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 3.1e-197 692.2 431 78.2
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 3.2e-194 682.2 431 77.7
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.8e-192 676.4 582 62.2
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 9.6e-191 670.6 475 74.1
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.7e-190 668.7 399 85.0
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.3e-187 660.2 400 82.0
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 3.9e-184 648.7 426 73.7
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 7.6e-180 634.4 430 72.6
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 3.2e-178 629.0 459 66.9
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 7.9e-177 624.4 430 71.2
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 5.9e-172 608.2 426 70.2
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 9.4e-170 600.9 369 80.5
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.6e-156 557.0 324 85.2
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.5e-156 555.4 339 82.0
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.5e-154 548.5 299 93.3
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.0e-148 530.0 302 86.4
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 7.7e-148 528.1 391 72.1
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 2.7e-145 519.6 434 60.8
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 8.0e-145 518.1 335 78.8
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.6e-143 513.1 329 77.2
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.7e-142 509.2 299 87.0
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 2.5e-138 496.5 430 60.5
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 6.1e-137 491.9 426 58.0
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.8e-133 480.3 344 73.8
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.0e-123 448.0 277 79.4
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 1.5e-119 434.1 424 55.7
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.0e-107 393.3 428 46.7
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 1.2e-97 361.3 242 76.9
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.9e-94 349.4 437 44.2
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-79 300.1 175 81.7
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.8e-73 279.6 358 43.3
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.1e-64 250.0 137 92.0
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.6e-52 211.5 160 70.0
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 3.1e-48 197.2 150 70.0
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.7e-47 192.6 131 77.1
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 3.0e-43 180.6 114 77.2
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 5.2e-43 179.9 180 51.1
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 6.3e-41 172.9 120 69.2
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.9e-37 161.4 459 29.2
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 3.7e-33 147.1 90 80.0
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.5e-29 135.2 125 57.6
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 4.2e-29 133.7 102 64.7
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 5.5e-29 133.3 145 51.0
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 9.4e-29 132.5 145 51.0
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 3.6e-28 130.6 145 50.3
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 8.0e-28 129.4 142 50.0
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 3.0e-27 127.5 80 75.0
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 9.1e-24 115.9 78 69.2
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 5.0e-22 110.2 88 65.9
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 5.0e-22 110.2 88 65.9
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.1e-21 109.0 89 64.0
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.6e-20 105.1 82 69.5
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 8.0e-20 102.8 258 30.2
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 8.3e-17 92.8 53 83.0
Nitab4.5_0001773g0070 Nicotiana tabacum HOM05D000974 ORTHO05D285698 9.2e-08 62.8 44 61.4


User provided reference genes

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