Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.4e-69 265.4 136 100.0
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.5e-66 256.1 137 97.1
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 6.2e-65 250.8 137 95.6
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 4.9e-62 241.1 137 90.5
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.4e-61 239.6 137 89.1
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 4.1e-61 238.0 137 87.6
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 5.4e-61 237.7 137 88.3
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 1.6e-60 236.1 137 86.9
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.6e-60 234.6 137 86.1
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.6e-60 234.6 137 86.1
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 4.6e-60 234.6 137 86.1
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 6.0e-60 234.2 137 86.9
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-59 233.0 137 85.4
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-59 233.0 137 85.4
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-59 233.0 137 85.4
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.3e-59 233.0 137 85.4
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 1.3e-59 233.0 137 85.4
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 1.7e-59 232.6 135 86.7
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 2.3e-59 232.3 132 89.4
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 3.0e-59 231.9 137 86.9
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 8.7e-59 230.3 142 86.6
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 1.1e-58 229.9 133 88.0
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 1.1e-58 229.9 138 86.2
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 2.5e-58 228.8 133 87.2
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 2.5e-58 228.8 144 84.0
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 3.3e-58 228.4 137 83.9
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 3.3e-58 228.4 136 85.3
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 5.6e-58 227.6 148 81.8
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 1.6e-57 226.1 137 83.2
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 1.6e-57 226.1 138 85.5
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 2.1e-57 225.7 137 86.1
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 3.6e-57 224.9 145 83.4
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 3.6e-57 224.9 137 83.2
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 4.7e-57 224.6 137 83.2
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 4.7e-57 224.6 137 82.5
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 6.2e-57 224.2 137 82.5
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 6.2e-57 224.2 137 83.9
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.4e-56 223.0 136 82.4
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.4e-56 223.0 136 82.4
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.4e-56 223.0 136 82.4
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 1.4e-56 223.0 137 82.5
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 4.0e-56 221.5 134 82.8
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 4.0e-56 221.5 129 86.8
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 4.0e-56 221.5 137 81.8
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 4.0e-56 221.5 137 83.2
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 5.2e-56 221.1 139 82.7
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 1.2e-55 219.9 136 80.9
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 1.5e-55 219.5 137 79.6
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 3.4e-55 218.4 137 80.3
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 5.8e-55 217.6 137 79.6
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 7.6e-55 217.2 135 81.5
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 9.9e-55 216.9 132 82.6
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 9.9e-55 216.9 137 77.4
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 9.9e-55 216.9 140 79.3
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 9.9e-55 216.9 129 83.7
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.3e-54 216.5 137 78.8
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.7e-54 216.1 164 72.0
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 2.2e-54 215.7 132 81.8
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 4.9e-54 214.5 137 79.6
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 6.4e-54 214.2 169 72.2
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 1.1e-53 213.4 137 80.3
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 1.1e-53 213.4 137 80.3
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 1.4e-53 213.0 137 79.6
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 1.9e-53 212.6 129 83.7
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 3.2e-53 211.8 137 78.8
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 3.2e-53 211.8 137 78.8
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 3.2e-53 211.8 137 78.8
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 4.2e-53 211.5 137 78.8
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 4.2e-53 211.5 137 78.8
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 4.2e-53 211.5 137 78.8
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 4.2e-53 211.5 137 79.6
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 5.4e-53 211.1 140 75.7
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.2e-52 209.9 138 78.3
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.2e-52 209.9 137 78.1
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 2.7e-52 208.8 137 77.4
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 2.7e-52 208.8 137 77.4
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 4.6e-52 208.0 142 76.1
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 4.6e-52 208.0 144 75.0
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 7.8e-52 207.2 137 78.8
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 7.8e-52 207.2 137 77.4
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 7.8e-52 207.2 140 74.3
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 7.8e-52 207.2 123 85.4
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 1.7e-51 206.1 123 84.6
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 2.3e-51 205.7 144 75.0
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 3.9e-51 204.9 137 77.4
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 3.9e-51 204.9 133 78.2
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 5.1e-51 204.5 129 81.4
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 6.6e-51 204.1 137 75.9
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 8.7e-51 203.8 136 80.9
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 1.9e-50 202.6 128 81.2
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 2.5e-50 202.2 126 84.1
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.3e-50 201.8 110 97.3
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 4.3e-50 201.4 140 78.6
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.3e-49 199.9 127 78.7
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 1.1e-48 196.8 137 75.9
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 1.4e-48 196.4 137 75.2
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 2.4e-48 195.7 125 81.6
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 2.4e-48 195.7 125 81.6
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 4.0e-48 194.9 123 80.5
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 2.6e-47 192.2 131 73.3
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 5.8e-47 191.0 131 72.5
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 1.7e-46 189.5 106 90.6
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.4e-45 186.4 110 87.3
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 1.4e-45 186.4 131 71.0
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 1.9e-45 186.0 128 70.3
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 4.2e-45 184.9 110 87.3
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 1.2e-44 183.3 110 89.1
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 2.1e-44 182.6 115 83.5
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 3.3e-42 175.3 124 67.7
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 9.6e-42 173.7 112 81.2
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.6e-41 172.9 145 67.6
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.6e-41 172.9 114 79.8
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 4.0e-40 168.3 107 84.1
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 1.5e-39 166.4 126 69.8
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 3.4e-39 165.2 113 78.8
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 1.7e-38 162.9 110 79.1
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 2.7e-36 155.6 106 74.5
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 3.5e-36 155.2 118 72.0
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 1.1e-34 150.2 133 63.2
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 3.3e-34 148.7 84 90.5
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 3.3e-34 148.7 115 65.2
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 9.6e-34 147.1 85 87.1
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 2.1e-33 146.0 84 90.5
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 1.8e-32 142.9 182 50.0
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 2.4e-32 142.5 140 60.7
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 3.1e-32 142.1 84 88.1
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 9.0e-32 140.6 112 67.9
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 6.5e-30 134.4 86 81.4
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 5.5e-29 131.3 84 83.3
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 4.6e-28 128.3 104 60.6
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 1.3e-25 120.2 132 56.1
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 4.8e-25 118.2 120 56.7
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 6.3e-25 117.9 100 65.0
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 8.2e-25 117.5 74 82.4
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 4.1e-24 115.2 64 87.5
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 1.0e-22 110.5 65 81.5
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.0e-22 110.5 114 50.0
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 2.1e-20 102.8 94 60.6
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 5.7e-18 94.7 53 84.9
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 7.4e-18 94.4 60 85.0
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 1.3e-17 93.6 62 75.8
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 6.3e-17 91.3 53 81.1
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 8.2e-17 90.9 122 40.2
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.4e-15 85.5 52 76.9
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 2.2e-14 82.8 124 42.7
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 5.0e-14 81.6 61 72.1
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 8.5e-14 80.9 61 72.1
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.6e-12 76.6 77 55.8
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 1.4e-11 73.6 45 77.8
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.8e-11 73.2 157 37.6
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 3.1e-08 62.4 110 37.3
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 4.5e-07 58.5 41 73.2


User provided reference genes

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