Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.8e-249 865.5 462 100.0
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.1e-153 547.4 286 99.0
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.3e-135 486.5 446 65.5
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.4e-116 423.3 465 57.4
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 6.2e-109 398.7 422 59.2
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 7.6e-107 391.7 464 55.2
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.4e-91 339.7 365 54.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 4.5e-91 339.3 402 54.0
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.0e-87 328.2 396 51.8
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 2.3e-87 327.0 339 55.2
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 3.0e-87 326.6 407 51.6
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 6.7e-87 325.5 424 50.9
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 4.4e-86 322.8 428 50.0
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 3.7e-85 319.7 410 49.5
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.4e-84 317.8 444 47.3
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 6.9e-84 315.5 380 53.7
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 5.9e-83 312.4 335 55.8
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 3.2e-81 306.6 349 55.9
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 4.2e-81 306.2 449 47.0
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 6.1e-80 302.4 435 49.7
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.5e-78 297.7 377 52.3
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 3.3e-78 296.6 321 55.1
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 3.7e-77 293.1 373 51.7
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.8e-76 290.8 423 48.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 4.5e-75 286.2 377 48.8
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 5.9e-75 285.8 412 48.5
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 7.7e-75 285.4 336 53.0
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.2e-74 283.9 376 49.7
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.1e-73 281.6 337 52.2
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.1e-73 281.6 318 54.4
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.9e-73 280.8 421 45.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.9e-73 280.8 412 48.1
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.2e-73 280.0 419 46.5
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 5.5e-73 279.3 435 46.2
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 2.7e-72 276.9 386 48.7
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 4.7e-72 276.2 431 46.4
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 6.1e-72 275.8 425 46.1
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 5.2e-71 272.7 340 52.9
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 5.2e-71 272.7 387 47.3
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 6.7e-71 272.3 384 49.2
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 3.3e-70 270.0 461 44.5
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 9.7e-70 268.5 348 49.7
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 9.7e-70 268.5 348 49.7
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 9.7e-70 268.5 408 45.3
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 2.2e-69 267.3 398 46.5
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 6.3e-69 265.8 358 48.3
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 6.3e-69 265.8 397 45.6
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 8.2e-69 265.4 341 49.6
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 3.1e-68 263.5 387 46.0
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 7.0e-68 262.3 364 47.3
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 9.1e-68 261.9 329 50.5
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.2e-67 261.5 411 46.5
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.6e-67 261.2 344 48.8
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.6e-67 261.2 362 48.6
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 3.5e-67 260.0 381 47.0
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.2e-66 257.3 408 45.6
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.1e-65 255.0 370 47.6
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.9e-65 254.2 277 54.5
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.6e-64 250.0 351 45.9
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 8.0e-64 248.8 397 45.8
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.4e-63 248.1 328 46.0
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 5.2e-63 246.1 338 46.2
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 6.8e-63 245.7 429 42.7
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 6.8e-63 245.7 483 42.4
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 6.8e-63 245.7 351 47.0
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.2e-62 245.0 379 42.0
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 5.7e-62 242.7 448 43.1
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 7.5e-62 242.3 420 41.4
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 3.7e-61 240.0 257 55.3
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 8.3e-61 238.8 349 46.1
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 9.1e-60 235.3 350 43.1
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.6e-59 234.6 288 50.3
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.0e-59 234.2 364 42.6
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.0e-59 234.2 383 44.1
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 1.0e-58 231.9 407 39.8
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 2.3e-58 230.7 352 43.8
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 2.9e-58 230.3 354 43.2
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 5.0e-58 229.6 331 45.6
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 1.5e-57 228.0 364 43.7
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.8e-55 219.2 389 40.4
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 3.4e-54 216.9 409 39.4
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.2e-53 214.2 361 42.7
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.4e-52 210.7 374 38.8
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-51 207.6 377 38.7
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.0e-50 205.3 313 41.5
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.3e-50 204.9 270 50.4
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 7.3e-49 199.1 343 37.0
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 9.5e-49 198.7 251 49.8
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 9.5e-49 198.7 248 50.0
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 9.5e-49 198.7 266 46.6
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.2e-48 198.4 383 38.9
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 6.1e-48 196.1 310 40.3
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.0e-47 195.3 299 44.5
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.5e-46 191.4 336 41.7
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.5e-46 191.4 338 42.0
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.0e-46 191.0 339 41.6
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 2.6e-46 190.7 338 37.3
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 3.4e-46 190.3 298 43.0
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 5.7e-46 189.5 339 41.3
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 5.7e-46 189.5 339 41.3
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 2.9e-45 187.2 333 41.4
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.4e-44 184.9 337 39.5
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 3.5e-43 180.3 417 34.8
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 7.8e-43 179.1 380 36.6
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.0e-42 177.2 378 38.1
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.9e-42 176.8 419 34.4
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 4.3e-41 173.3 200 48.5
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 5.6e-41 172.9 369 39.3
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 7.3e-41 172.6 353 38.5
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 9.5e-41 172.2 299 43.1
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.0e-39 166.8 418 33.7
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.4e-38 163.3 293 38.6
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.7e-37 160.2 315 37.8
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 4.1e-36 156.8 420 35.0
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.2e-35 155.2 325 37.8
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 6.0e-35 152.9 358 37.4
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.2e-29 134.4 371 34.8
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.2e-27 128.6 159 51.6
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.9e-21 107.5 189 37.6
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.2e-16 89.7 65 64.6
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.4e-15 88.6 184 32.6
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.3e-10 71.2 110 50.0
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.3e-10 71.2 110 50.0
PGSC0003DMG401012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 3.3e-09 67.4 100 49.0
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.6e-08 63.9 70 44.3
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 8.1e-08 62.8 117 30.8
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.4e-07 62.0 134 35.8
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.8e-07 61.6 117 30.8
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.2e-06 58.9 111 37.8


User provided reference genes

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