Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.6e-120 436.0 208 100.0
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 9.8e-46 187.6 100 92.0
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 9.8e-46 187.6 100 92.0
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.3e-45 187.2 100 91.0
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 1.3e-45 187.2 109 84.4
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.7e-45 186.8 100 91.0
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 2.2e-45 186.4 100 91.0
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 2.2e-45 186.4 100 91.0
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 2.9e-45 186.0 100 90.0
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 2.9e-45 186.0 100 90.0
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 2.9e-45 186.0 100 90.0
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 2.9e-45 186.0 100 90.0
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 2.9e-45 186.0 100 90.0
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 2.9e-45 186.0 100 91.0
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 3.7e-45 185.7 109 83.5
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 4.9e-45 185.3 109 83.5
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 4.9e-45 185.3 109 83.5
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 4.9e-45 185.3 100 90.0
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 4.9e-45 185.3 100 90.0
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 4.9e-45 185.3 100 91.0
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 4.9e-45 185.3 100 91.0
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 6.4e-45 184.9 109 83.5
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 6.4e-45 184.9 100 90.0
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 8.3e-45 184.5 100 90.0
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 8.3e-45 184.5 100 90.0
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.1e-44 184.1 100 89.0
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 1.1e-44 184.1 100 90.0
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.1e-44 184.1 100 90.0
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.4e-44 183.7 100 89.0
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.4e-44 183.7 100 89.0
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 1.4e-44 183.7 100 90.0
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 1.4e-44 183.7 100 90.0
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 1.4e-44 183.7 109 83.5
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.4e-44 183.7 100 89.0
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 1.9e-44 183.3 100 89.0
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.4e-44 183.0 100 89.0
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.4e-44 183.0 100 89.0
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 2.4e-44 183.0 109 81.7
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 2.4e-44 183.0 109 82.6
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 2.4e-44 183.0 100 89.0
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 2.4e-44 183.0 100 89.0
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 3.2e-44 182.6 100 89.0
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 3.2e-44 182.6 109 81.7
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 3.2e-44 182.6 109 82.6
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 3.2e-44 182.6 100 89.0
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 3.2e-44 182.6 100 90.0
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 3.2e-44 182.6 100 89.0
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 3.2e-44 182.6 100 89.0
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 4.1e-44 182.2 100 88.0
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 4.1e-44 182.2 109 81.7
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.1e-44 182.2 100 89.0
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.1e-44 182.2 100 89.0
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 4.1e-44 182.2 100 90.0
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 4.1e-44 182.2 100 87.0
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 4.1e-44 182.2 100 88.0
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 4.1e-44 182.2 100 88.0
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 4.1e-44 182.2 100 89.0
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 5.4e-44 181.8 100 89.0
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 5.4e-44 181.8 100 88.0
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 7.0e-44 181.4 100 86.0
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 7.0e-44 181.4 100 89.0
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 7.0e-44 181.4 100 88.0
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 9.2e-44 181.0 109 81.7
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 9.2e-44 181.0 108 82.4
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 9.2e-44 181.0 100 87.0
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 9.2e-44 181.0 100 87.0
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.2e-43 180.6 100 88.0
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.2e-43 180.6 100 88.0
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.6e-43 180.3 100 87.0
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 2.1e-43 179.9 100 88.0
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 3.5e-43 179.1 100 88.0
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.5e-43 179.1 100 88.0
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 4.6e-43 178.7 100 87.0
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 4.6e-43 178.7 101 86.1
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 4.6e-43 178.7 101 86.1
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 4.6e-43 178.7 100 85.0
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 6.0e-43 178.3 100 88.0
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 6.0e-43 178.3 100 88.0
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 6.0e-43 178.3 100 86.0
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 6.0e-43 178.3 100 86.0
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 6.0e-43 178.3 109 79.8
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 7.8e-43 177.9 100 87.0
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 7.8e-43 177.9 100 87.0
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 7.8e-43 177.9 100 87.0
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 7.8e-43 177.9 100 87.0
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 7.8e-43 177.9 100 87.0
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 7.8e-43 177.9 108 81.5
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 7.8e-43 177.9 100 87.0
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 1.0e-42 177.6 100 86.0
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 1.0e-42 177.6 100 86.0
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.3e-42 177.2 100 87.0
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 1.7e-42 176.8 100 86.0
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 1.7e-42 176.8 100 86.0
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 1.7e-42 176.8 100 86.0
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.7e-42 176.8 100 86.0
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.7e-42 176.8 100 86.0
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.7e-42 176.8 100 87.0
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.7e-42 176.8 100 85.0
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 1.7e-42 176.8 100 84.0
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 1.7e-42 176.8 100 84.0
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 2.3e-42 176.4 100 82.0
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 2.3e-42 176.4 100 87.0
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 2.3e-42 176.4 100 86.0
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 3.0e-42 176.0 109 80.7
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 3.0e-42 176.0 109 80.7
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 3.9e-42 175.6 100 85.0
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 3.9e-42 175.6 100 85.0
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 3.9e-42 175.6 100 84.0
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 3.9e-42 175.6 100 84.0
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 5.1e-42 175.3 100 83.0
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 5.1e-42 175.3 100 84.0
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 5.1e-42 175.3 100 83.0
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 5.1e-42 175.3 100 83.0
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 6.6e-42 174.9 100 86.0
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 6.6e-42 174.9 100 86.0
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 6.6e-42 174.9 100 86.0
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.1e-41 174.1 100 85.0
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.5e-41 173.7 100 85.0
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.5e-41 173.7 100 82.0
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.3e-41 172.6 100 84.0
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 1.1e-39 167.5 109 74.3
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.8e-39 166.8 100 79.0
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.3e-39 166.4 110 77.3
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 3.1e-39 166.0 109 74.3
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 1.5e-38 163.7 100 78.0
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.0e-38 163.3 100 80.0
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 5.8e-38 161.8 100 78.0
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 5.8e-38 161.8 100 78.0
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 1.7e-37 160.2 109 71.6
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 3.7e-37 159.1 109 70.6
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 4.9e-37 158.7 149 59.1
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 2.4e-36 156.4 109 68.8
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 6.0e-35 151.8 153 50.3
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.1e-33 147.5 70 95.7
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 5.2e-31 138.7 71 87.3
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.2e-31 138.7 72 88.9
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 6.8e-31 138.3 72 88.9
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.8e-31 138.3 72 88.9
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 2.2e-29 133.3 108 62.0
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 2.9e-29 132.9 71 84.5
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 3.8e-29 132.5 100 57.0
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.1e-28 131.0 72 84.7
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.4e-28 130.6 72 84.7
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.4e-28 129.8 73 83.6
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 5.4e-28 128.6 83 79.5
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 9.2e-28 127.9 83 78.3
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.1e-27 126.7 74 85.1
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 3.5e-27 125.9 74 83.8
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 6.0e-27 125.2 63 92.1
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 7.8e-27 124.8 73 82.2
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 1.3e-26 124.0 74 82.4
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 2.3e-26 123.2 74 78.4
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.7e-26 121.3 63 90.5
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.9e-25 120.2 74 81.1
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.5e-25 119.8 63 88.9
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.2e-24 115.2 63 85.7
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.1e-23 114.4 57 91.2
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.1e-23 114.4 57 91.2
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.1e-23 114.4 57 91.2
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.1e-23 114.4 57 91.2
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.0e-23 112.5 57 89.5
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.3e-21 107.5 57 86.0
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 2.4e-20 103.2 78 73.1
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.2e-20 102.4 58 84.5
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 4.6e-19 99.0 101 45.5
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 4.3e-17 92.4 58 81.0
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 9.0e-15 84.7 74 63.5
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 5.8e-14 82.0 68 66.2
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 4.9e-13 79.0 99 46.5
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 7.1e-12 75.1 96 41.7
CSS0019550 Camellia sinensis var. sinensis HOM05D001221 ORTHO05D002870 3.9e-10 69.3 45 73.3
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 8.1e-08 61.6 27 96.3
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 6.9e-07 58.5 26 96.2


User provided reference genes

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