Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010052 Camellia sinensis var. sinensis HOM05D005309 ORTHO05D006648 2.2e-62 242.3 138 100.0
CSS0009662 Camellia sinensis var. sinensis HOM05D005309 ORTHO05D006648 1.2e-42 176.8 146 69.9
CSS0016258 Camellia sinensis var. sinensis HOM05D005309 ORTHO05D006648 1.8e-40 169.5 146 67.1
GSVIVG01020840001 Vitis vinifera HOM05D005309 ORTHO05D006648 1.9e-29 132.9 169 49.1
vmacro08735 Vaccinium macrocarpon HOM05D005309 ORTHO05D006648 1.2e-28 130.2 142 55.6
Rhsim12G0010200 Rhododendron simsii HOM05D005309 ORTHO05D006648 2.1e-28 129.4 151 54.3
Dinv18821 Davidia involucrata HOM05D005309 ORTHO05D006648 5.2e-27 124.8 166 50.0
Lj1A593G32 Lonicera japonica HOM05D005309 ORTHO05D006648 6.8e-27 124.4 170 47.6
Manes.02G208560 Manihot esculenta HOM05D005309 ORTHO05D006648 2.6e-26 122.5 158 48.1
Gohir.D11G164100 Gossypium hirsutum HOM05D005309 ORTHO05D006648 3.4e-26 122.1 169 45.6
Gorai.007G174900 Gossypium raimondii HOM05D005309 ORTHO05D006648 3.4e-26 122.1 169 45.6
CiPaw.04G138100 Carya illinoinensis HOM05D005309 ORTHO05D006648 5.7e-26 121.3 168 47.0
MSTRG.14909 Avicennia marina HOM05D005309 ORTHO05D006648 7.5e-26 120.9 160 49.4
Gohir.A11G157100 Gossypium hirsutum HOM05D005309 ORTHO05D006648 1.7e-25 119.8 169 45.0
Nitab4.5_0005142g0020 Nicotiana tabacum HOM05D005309 ORTHO05D006648 1.7e-25 119.8 144 52.8
Thecc.01G169500 Theobroma cacao HOM05D005309 ORTHO05D006648 1.7e-25 119.8 169 46.2
TAR627G0108 Trochodendron aralioides HOM05D005309 ORTHO05D006648 1.7e-25 119.8 170 47.1
COL.COLO4_08888 Corchorus olitorius HOM05D005309 ORTHO05D006648 2.2e-25 119.4 169 43.8
CAN.G275.11 Capsicum annuum HOM05D005309 ORTHO05D006648 3.7e-25 118.6 160 48.8
Nn3g20733 Nelumbo nucifera HOM05D005309 ORTHO05D006648 4.9e-25 118.2 170 43.5
Nitab4.5_0001552g0030 Nicotiana tabacum HOM05D005309 ORTHO05D006648 4.9e-25 118.2 160 50.6
Solyc07g045070.3 Solanum lycopersicum HOM05D005309 ORTHO05D006648 1.1e-24 117.1 157 49.0
Cpa.g.sc50.107 Carica papaya HOM05D005309 ORTHO05D006648 1.4e-24 116.7 166 45.8
Peaxi162Scf00359g00710 Petunia axillaris HOM05D005309 ORTHO05D006648 1.4e-24 116.7 160 49.4
Sopen07g023630 Solanum pennellii HOM05D005309 ORTHO05D006648 1.4e-24 116.7 157 49.0
SGA_v2.0_scaffold73G24489 Striga asiatica HOM05D005309 ORTHO05D006648 1.8e-24 116.3 147 50.3
Potri.005G204900 Populus trichocarpa HOM05D005309 ORTHO05D006648 2.4e-24 115.9 159 44.7
Atru.chr6.2050 Acer truncatum HOM05D005309 ORTHO05D006648 3.2e-24 115.5 169 45.0
Ciclev10031016m.g Citrus clementina HOM05D005309 ORTHO05D006648 3.2e-24 115.5 169 45.6
Cfa023077 Carpinus fangiana HOM05D005309 ORTHO05D006648 7.0e-24 114.4 171 45.0
FAN05G5670 Fragaria x ananassa HOM05D005309 ORTHO05D006648 9.2e-24 114.0 164 43.3
VMungo0647G1913 Vigna mungo HOM05D005309 ORTHO05D006648 1.2e-23 113.6 159 45.3
Migut.M00059 Erythranthe guttata HOM05D005309 ORTHO05D006648 1.6e-23 113.2 141 51.1
Cc05_g01700 Coffea canephora HOM05D005309 ORTHO05D006648 2.0e-23 112.8 160 47.5
FAN02G0734 Fragaria x ananassa HOM05D005309 ORTHO05D006648 2.0e-23 112.8 164 42.7
FAN09G0570 Fragaria x ananassa HOM05D005309 ORTHO05D006648 2.7e-23 112.5 164 43.3
Duzib133G0867 Durio zibethinus HOM05D005309 ORTHO05D006648 4.6e-23 111.7 152 47.4
Hma1.2p1_0147F.1_g065840 Hydrangea macrophylla HOM05D005309 ORTHO05D006648 4.6e-23 111.7 155 46.5
PGR142G1004 Punica granatum HOM05D005309 ORTHO05D006648 4.6e-23 111.7 170 43.5
FAN14G4003 Fragaria x ananassa HOM05D005309 ORTHO05D006648 5.9e-23 111.3 167 43.1
FvH4_6g38630 Fragaria vesca HOM05D005309 ORTHO05D006648 7.8e-23 110.9 164 42.7
Glyma.14G030100 Glycine max HOM05D005309 ORTHO05D006648 7.8e-23 110.9 159 44.7
Sabra05G0155700 Salix brachista HOM05D005309 ORTHO05D006648 7.8e-23 110.9 156 43.6
RcHm_v2.0_Chr2g0152091 Rosa chinensis HOM05D005309 ORTHO05D006648 1.0e-22 110.5 171 41.5
THA.LOC104826242 Tarenaya hassleriana HOM05D005309 ORTHO05D006648 1.7e-22 109.8 170 41.8
QL11p000196 Quercus lobata HOM05D005309 ORTHO05D006648 2.3e-22 109.4 165 44.2
Oeu029978.1 Olea europaea HOM05D005309 ORTHO05D006648 3.9e-22 108.6 160 45.6
Phvul.008G194100 Phaseolus vulgaris HOM05D005309 ORTHO05D006648 3.9e-22 108.6 158 44.3
MD17G1135100 Malus domestica HOM05D005309 ORTHO05D006648 6.6e-22 107.8 170 42.9
PSO384G0241 Papaver somniferum HOM05D005309 ORTHO05D006648 8.6e-22 107.5 169 42.0
Zm00001eb170650 Zea mays HOM05D005309 ORTHO05D006648 1.9e-21 106.3 166 42.8
Prupe.3G177300 Prunus persica HOM05D005309 ORTHO05D006648 2.5e-21 105.9 170 42.4
TWI23G0800 Tripterygium wilfordii HOM05D005309 ORTHO05D006648 3.3e-21 105.5 158 43.7
Aqoxy4G00092 Aquilegia oxysepala HOM05D005309 ORTHO05D006648 4.3e-21 105.1 168 42.9
HanXRQChr01g0028511 Helianthus annuus HOM05D005309 ORTHO05D006648 4.3e-21 105.1 162 45.1
ClCG11G016530 Citrullus lanatus HOM05D005309 ORTHO05D006648 5.6e-21 104.8 155 43.9
Os08g0365900 Oryza sativa ssp. japonica HOM05D005309 ORTHO05D006648 5.6e-21 104.8 168 42.3
Medtr5g091110 Medicago truncatula HOM05D005309 ORTHO05D006648 1.2e-20 103.6 163 42.3
CANSAT64G0469 Cannabis sativa HOM05D005309 ORTHO05D006648 1.6e-20 103.2 179 39.1
CDE02G3568 Ceratophyllum demersum HOM05D005309 ORTHO05D006648 1.6e-20 103.2 157 44.6
arahy.Tifrunner.gnm1.ann1.9TU2QX Arachis hypogaea HOM05D005309 ORTHO05D006648 2.1e-20 102.8 169 41.4
arahy.Tifrunner.gnm1.ann1.JRP0UJ Arachis hypogaea HOM05D005309 ORTHO05D006648 2.1e-20 102.8 169 41.4
MELO3C022960.2 Cucumis melo HOM05D005309 ORTHO05D006648 4.7e-20 101.7 155 44.5
Psat2g017040 Pisum sativum HOM05D005309 ORTHO05D006648 6.1e-20 101.3 167 40.7
Eucgr.K01225 Eucalyptus grandis HOM05D005309 ORTHO05D006648 8.0e-20 100.9 171 40.9
EL10Ac2g04244 Beta vulgaris HOM05D005309 ORTHO05D006648 1.0e-19 100.5 152 46.1
SalBow7G0619 Salvia bowleyana HOM05D005309 ORTHO05D006648 1.4e-19 100.1 152 43.4
LjContig00049g0017299 Lotus japonicus HOM05D005309 ORTHO05D006648 2.3e-19 99.4 169 39.1
CsaV3_4G031990 Cucumis sativus L. HOM05D005309 ORTHO05D006648 4.0e-19 98.6 155 43.9
Hund02144 Selenicereus undatus HOM05D005309 ORTHO05D006648 4.0e-19 98.6 139 47.5
Ah.10g035950 Amaranthus hybridus HOM05D005309 ORTHO05D006648 5.2e-19 98.2 140 46.4
Ca_06266_v3 Cicer arietinum L. HOM05D005309 ORTHO05D006648 5.2e-19 98.2 168 40.5
Sc09g0008320 Simmondsia chinensis HOM05D005309 ORTHO05D006648 6.8e-19 97.8 132 47.7
Aa31LG1G7660 Aethionema arabicum HOM05D005309 ORTHO05D006648 1.2e-18 97.1 161 41.0
TPR.G10159 Trifolium pratense HOM05D005309 ORTHO05D006648 1.2e-18 97.1 167 41.3
Actinidia11207 Actinidia chinensis HOM05D005309 ORTHO05D006648 2.0e-18 96.3 128 50.8
DCAR_016942 Daucus carota HOM05D005309 ORTHO05D006648 1.7e-17 93.2 165 40.0
Lalb_Chr04g0248901 Lupinus albus HOM05D005309 ORTHO05D006648 2.2e-17 92.8 169 37.9
PSO339G5406 Papaver somniferum HOM05D005309 ORTHO05D006648 2.9e-17 92.4 157 38.9
A08p35920 Brassica napus HOM05D005309 ORTHO05D006648 4.9e-17 91.7 154 42.2
ECA234G1968 Erigeron canadensis HOM05D005309 ORTHO05D006648 8.3e-17 90.9 180 37.8
C08p02650 Brassica napus HOM05D005309 ORTHO05D006648 1.1e-16 90.5 156 41.7
BolC8t47061H Brassica oleracea HOM05D005309 ORTHO05D006648 1.1e-16 90.5 156 41.7
CARHR006170 Cardamine hirsuta HOM05D005309 ORTHO05D006648 1.4e-16 90.1 158 41.1
AUR62012368 Chenopodium quinoa HOM05D005309 ORTHO05D006648 1.4e-16 90.1 155 40.0
Thhalv10007146m.g Eutrema salsugineum HOM05D005309 ORTHO05D006648 1.4e-16 90.1 155 42.6
Lsat_1_v5_gn_4_26360 Lactuca sativa HOM05D005309 ORTHO05D006648 1.4e-16 90.1 157 40.8
Sp1g05320 Schrenkiella parvula HOM05D005309 ORTHO05D006648 1.9e-16 89.7 156 41.7
BcaNung07076 Brassica carinata HOM05D005309 ORTHO05D006648 5.4e-16 88.2 162 37.7
C05p04800 Brassica napus HOM05D005309 ORTHO05D006648 5.4e-16 88.2 162 37.7
BolC5t29253H Brassica oleracea HOM05D005309 ORTHO05D006648 5.4e-16 88.2 162 37.7
A10p05200 Brassica napus HOM05D005309 ORTHO05D006648 7.0e-16 87.8 161 39.1
Carub.0001s0593 Capsella rubella HOM05D005309 ORTHO05D006648 1.6e-15 86.7 161 38.5
AL1G16590 Arabidopsis lyrata HOM05D005309 ORTHO05D006648 2.7e-15 85.9 161 39.8
BraA08t35499Z Brassica rapa HOM05D005309 ORTHO05D006648 4.6e-15 85.1 154 39.0
HPP92_023436 Vanilla planifolia HOM05D005309 ORTHO05D006648 6.0e-15 84.7 159 37.7
SMO111G0017 Selaginella moellendorffii HOM05D005309 ORTHO05D006648 7.8e-15 84.3 147 38.8
AT1G06560 Arabidopsis thaliana HOM05D005309 ORTHO05D006648 3.9e-14 82.0 161 39.8
AagrBONN_evm.TU.Sc2ySwM_362.1083 Anthoceros agrestis HOM05D005309 ORTHO05D006648 1.5e-13 80.1 146 38.4
BraA10t42787Z Brassica rapa HOM05D005309 ORTHO05D006648 1.5e-13 80.1 162 37.7
unitig_899.g15343 Utricularia gibba HOM05D005309 ORTHO05D006648 1.9e-13 79.7 158 38.0
SMO293G0021 Selaginella moellendorffii HOM05D005309 ORTHO05D006648 1.2e-12 77.0 167 34.7
BcaC07g36798 Brassica carinata HOM05D005309 ORTHO05D006648 4.7e-12 75.1 146 39.0
BcaB02g06781 Brassica carinata HOM05D005309 ORTHO05D006648 9.8e-10 67.4 161 36.6
Mapoly0025s0011 Marchantia polymorpha HOM05D005309 ORTHO05D006648 2.4e-08 62.8 159 34.0
SEGI_00594 Sequoiadendron giganteum HOM05D005309 ORTHO05D006648 6.0e-07 58.2 60 50.0
Sed0027803 Sechium edule HOM05D005309 ORTHO05D006648 6.6e-06 54.7 33 78.8


User provided reference genes

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