Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010035 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 5.5e-44 180.6 96 100.0
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 1.4e-31 139.4 91 81.3
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 7.0e-31 137.1 95 77.9
CSS0001954 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 1.7e-29 132.5 94 76.6
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 2.3e-29 132.1 91 76.9
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 1.9e-28 129.0 91 78.0
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 1.2e-27 126.3 91 78.0
CSS0018605 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 4.7e-27 124.4 93 74.2
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 8.9e-26 120.2 91 73.6
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 1.5e-25 119.4 91 72.5
Peaxi162Scf00081g01329 Petunia axillaris HOM05D002450 ORTHO05D002953 2.0e-25 119.0 91 71.4
Cc10_g05590 Coffea canephora HOM05D002450 ORTHO05D002953 2.6e-25 118.6 90 73.3
Cpa.g.sc123.17 Carica papaya HOM05D002450 ORTHO05D002953 3.4e-25 118.2 91 70.3
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 2.2e-24 115.5 90 71.1
vmacro21449 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 3.7e-24 114.8 91 71.4
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 6.4e-24 114.0 82 74.4
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 6.4e-24 114.0 82 74.4
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 6.4e-24 114.0 82 74.4
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 8.3e-24 113.6 91 70.3
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 1.4e-23 112.8 88 69.3
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 1.9e-23 112.5 87 73.6
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.2e-23 111.7 81 75.3
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 3.2e-23 111.7 91 70.3
Atru.chr9.2196 Acer truncatum HOM05D002450 ORTHO05D002953 4.1e-23 111.3 82 73.2
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 4.1e-23 111.3 82 69.5
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 4.1e-23 111.3 81 75.3
Nitab4.5_0000934g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 4.1e-23 111.3 91 68.1
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 5.4e-23 110.9 88 71.6
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 5.4e-23 110.9 94 67.0
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 7.1e-23 110.5 92 68.5
Sabra02G0094400 Salix brachista HOM05D002450 ORTHO05D002953 7.1e-23 110.5 90 68.9
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 9.2e-23 110.2 82 70.7
Nn5g30523 Nelumbo nucifera HOM05D002450 ORTHO05D002953 9.2e-23 110.2 90 67.8
Nitab4.5_0003228g0010 Nicotiana tabacum HOM05D002450 ORTHO05D002953 9.2e-23 110.2 91 67.0
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 1.2e-22 109.8 90 67.8
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 1.6e-22 109.4 81 74.1
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 2.1e-22 109.0 91 68.1
Rhsim07G0221700 Rhododendron simsii HOM05D002450 ORTHO05D002953 2.1e-22 109.0 92 69.6
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 2.1e-22 109.0 90 66.7
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.7e-22 108.6 81 75.3
Solyc04g078050.3 Solanum lycopersicum HOM05D002450 ORTHO05D002953 2.7e-22 108.6 91 68.1
Sopen04g031640 Solanum pennellii HOM05D002450 ORTHO05D002953 2.7e-22 108.6 91 68.1
CAN.G1054.28 Capsicum annuum HOM05D002450 ORTHO05D002953 3.5e-22 108.2 91 68.1
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.5e-22 108.2 81 72.8
Gohir.D01G108500 Gossypium hirsutum HOM05D002450 ORTHO05D002953 4.6e-22 107.8 89 67.4
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 4.6e-22 107.8 89 65.2
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 4.6e-22 107.8 81 70.4
vmacro22069 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 6.0e-22 107.5 91 72.5
vmacro22793 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 6.0e-22 107.5 91 72.5
Rhsim06G0060700 Rhododendron simsii HOM05D002450 ORTHO05D002953 7.8e-22 107.1 90 72.2
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 1.0e-21 106.7 90 63.3
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 1.3e-21 106.3 82 68.3
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 1.3e-21 106.3 89 62.9
PSO675G5640 Papaver somniferum HOM05D002450 ORTHO05D002953 1.3e-21 106.3 87 69.0
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 1.7e-21 105.9 91 70.3
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 2.3e-21 105.5 82 68.3
Lj4C69T6 Lonicera japonica HOM05D002450 ORTHO05D002953 2.3e-21 105.5 91 68.1
MBI15_g06332_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D010775 3.0e-21 105.1 88 71.6
Nitab4.5_0000197g0100 Nicotiana tabacum HOM05D002450 ORTHO05D002953 3.0e-21 105.1 91 63.7
PSO541G0144 Papaver somniferum HOM05D002450 ORTHO05D002953 3.9e-21 104.8 86 68.6
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 3.9e-21 104.8 91 64.8
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 5.1e-21 104.4 91 65.9
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 5.1e-21 104.4 89 66.3
DCAR_008851 Daucus carota HOM05D002450 ORTHO05D002953 6.6e-21 104.0 90 65.6
MBI14_g43560_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 6.6e-21 104.0 88 68.2
Medtr3g102840 Medicago truncatula HOM05D002450 ORTHO05D002953 1.1e-20 103.2 89 65.2
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 1.5e-20 102.8 88 67.0
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.5e-20 102.8 95 67.4
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 1.9e-20 102.4 85 69.4
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 1.9e-20 102.4 89 62.9
Manes.03G054700 Manihot esculenta HOM05D002450 ORTHO05D002953 2.5e-20 102.1 92 59.8
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 3.3e-20 101.7 87 63.2
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 3.3e-20 101.7 89 65.2
TWI77G0253 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 3.3e-20 101.7 89 66.3
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 5.6e-20 100.9 85 68.2
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 5.6e-20 100.9 95 61.1
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 5.6e-20 100.9 81 66.7
Aqoxy1G00817 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 7.3e-20 100.5 91 64.8
Haze_25520 Corylus avellana HOM05D002450 ORTHO05D002953 7.3e-20 100.5 85 68.2
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 9.5e-20 100.1 88 64.8
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 9.5e-20 100.1 89 62.9
Eucgr.F02266 Eucalyptus grandis HOM05D002450 ORTHO05D002953 1.2e-19 99.8 87 69.0
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 1.6e-19 99.4 98 59.2
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 2.1e-19 99.0 97 60.8
TWI74G0610 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 4.7e-19 97.8 95 62.1
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 8.1e-19 97.1 82 68.3
Aqoxy2G03346 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 1.1e-18 96.7 89 62.9
Prupe.6G138300 Prunus persica HOM05D002450 ORTHO05D002953 1.1e-18 96.7 90 64.4
arahy.Tifrunner.gnm1.ann1.94F500 Arachis hypogaea HOM05D002450 ORTHO05D002953 1.4e-18 96.3 88 64.8
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 1.4e-18 96.3 87 60.9
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 1.4e-18 96.3 91 61.5
HanXRQChr06g0184031 Helianthus annuus HOM05D002450 ORTHO05D002953 2.3e-18 95.5 79 67.1
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 2.3e-18 95.5 89 61.8
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 4.0e-18 94.7 90 64.4
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 5.2e-18 94.4 92 60.9
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 6.8e-18 94.0 83 62.7
CDE07G0359 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 1.5e-17 92.8 72 69.4
arahy.Tifrunner.gnm1.ann1.J3PJS8 Arachis hypogaea HOM05D002450 ORTHO05D002953 2.0e-17 92.4 89 58.4
CDE04G2133 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 4.4e-17 91.3 91 59.3
MBI15_g43330_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 4.4e-17 91.3 75 70.7
Hund26558 Selenicereus undatus HOM05D002450 ORTHO05D002953 4.4e-17 91.3 92 59.8
THA.LOC104812586 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 5.8e-17 90.9 73 67.1
PSO210G5040 Papaver somniferum HOM05D002450 ORTHO05D002953 7.6e-17 90.5 77 67.5
Os02g0654400 Oryza sativa ssp. japonica HOM05D002450 ORTHO05D002953 9.9e-17 90.1 87 63.2
Ah.02g112100 Amaranthus hybridus HOM05D002450 ORTHO05D002953 1.3e-16 89.7 90 61.1
arahy.Tifrunner.gnm1.ann1.7S3FNV Arachis hypogaea HOM05D002450 ORTHO05D002953 1.3e-16 89.7 88 58.0
ECA232G4701 Erigeron canadensis HOM05D002450 ORTHO05D002953 1.7e-16 89.4 79 63.3
DCAR_012809 Daucus carota HOM05D002450 ORTHO05D002953 2.2e-16 89.0 89 53.9
AUR62024687 Chenopodium quinoa HOM05D002450 ORTHO05D002953 4.9e-16 87.8 57 78.9
Lsat_1_v5_gn_4_130920 Lactuca sativa HOM05D002450 ORTHO05D002953 8.3e-16 87.0 75 69.3
HPP92_026568 Vanilla planifolia HOM05D002450 ORTHO05D002953 1.1e-15 86.7 80 66.2
Oeu057366.3 Olea europaea HOM05D002450 ORTHO05D002953 1.4e-15 86.3 86 62.8
PGR031G3734 Punica granatum HOM05D002450 ORTHO05D002953 1.4e-15 86.3 47 91.5
RcHm_v2.0_Chr1g0327781 Rosa chinensis HOM05D002450 ORTHO05D002953 1.9e-15 85.9 79 64.6
ATR0665G484 Amborella trichopoda HOM05D002450 ORTHO05D002953 2.4e-15 85.5 84 61.9
Zm00001eb020720 Zea mays HOM05D002450 ORTHO05D002953 3.2e-15 85.1 87 57.5
Zm00001eb123340 Zea mays HOM05D002450 ORTHO05D002953 4.1e-15 84.7 91 58.2
MSTRG.24365 Avicennia marina HOM05D002450 ORTHO05D002953 1.0e-13 80.1 100 52.0
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 2.3e-13 79.0 45 86.7
Migut.N02766 Erythranthe guttata HOM05D002450 ORTHO05D002953 3.9e-13 78.2 90 55.6
SalBow1G6445 Salvia bowleyana HOM05D002450 ORTHO05D002953 5.1e-13 77.8 80 58.8
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 1.1e-12 76.6 90 53.3
SalBow7G3305 Salvia bowleyana HOM05D002450 ORTHO05D002953 1.1e-12 76.6 80 57.5
Lj4A760T37 Lonicera japonica HOM05D002450 ORTHO05D002953 1.5e-12 76.3 94 55.3
Thecc.01G353600 Theobroma cacao HOM05D002450 ORTHO05D002953 1.5e-12 76.3 45 82.2
TAR383G0391 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.2e-11 73.2 52 69.2
Os03g0441000 Oryza sativa ssp. japonica HOM05D002450 ORTHO05D002953 2.1e-11 72.4 78 56.4
arahy.Tifrunner.gnm1.ann1.Y74N3L Arachis hypogaea HOM05D002450 ORTHO05D002953 3.6e-11 71.6 56 75.0
MD03G1150900 Malus domestica HOM05D002450 ORTHO05D002953 4.7e-11 71.2 93 51.6
PGR031G1138 Punica granatum HOM05D002450 ORTHO05D002953 4.7e-11 71.2 100 47.0
SEGI_26944 Sequoiadendron giganteum HOM05D002450 ORTHO05D002953 6.2e-11 70.9 82 51.2
Ah.11g049460 Amaranthus hybridus HOM05D002450 ORTHO05D002953 1.1e-10 70.1 89 53.9
PSO210G7461 Papaver somniferum HOM05D002450 ORTHO05D002953 1.4e-10 69.7 58 62.1
Pp3c4_10340 Physcomitrium patens HOM05D002450 ORTHO05D002953 1.4e-10 69.7 94 45.7
A06p48030 Brassica napus HOM05D002450 ORTHO05D002953 2.4e-10 68.9 77 57.1
BraA06t27673Z Brassica rapa HOM05D002450 ORTHO05D002953 2.4e-10 68.9 77 57.1
Mapoly0015s0206 Marchantia polymorpha HOM05D002450 ORTHO05D002953 2.4e-10 68.9 46 71.7
HPP92_012495 Vanilla planifolia HOM05D002450 ORTHO05D002953 2.4e-10 68.9 92 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2387 Anthoceros agrestis HOM05D002450 ORTHO05D002953 4.0e-10 68.2 46 67.4
BcaC06g31721 Brassica carinata HOM05D002450 ORTHO05D002953 4.0e-10 68.2 77 57.1
CARHR180850 Cardamine hirsuta HOM05D002450 ORTHO05D002953 4.0e-10 68.2 49 73.5
BcaB07g30594 Brassica carinata HOM05D002450 ORTHO05D002953 5.2e-10 67.8 77 55.8
A02p27680 Brassica napus HOM05D002450 ORTHO05D002953 5.2e-10 67.8 78 55.1
BraA02t07807Z Brassica rapa HOM05D002450 ORTHO05D002953 5.2e-10 67.8 78 55.1
ECA232G4759 Erigeron canadensis HOM05D002450 ORTHO05D002953 5.2e-10 67.8 76 55.3
BcaC06g34680 Brassica carinata HOM05D002450 ORTHO05D002953 6.8e-10 67.4 77 55.8
C07p25690 Brassica napus HOM05D002450 ORTHO05D002953 6.8e-10 67.4 77 55.8
BolC7t43088H Brassica oleracea HOM05D002450 ORTHO05D002953 6.8e-10 67.4 77 55.8
AT5G43130 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 8.9e-10 67.0 77 55.8
Carub.0008s0559 Capsella rubella HOM05D002450 ORTHO05D002953 8.9e-10 67.0 94 47.9
Ca_22791_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 8.9e-10 67.0 73 61.6
Ca_26185_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 8.9e-10 67.0 73 61.6
Aa31LG9G13220 Aethionema arabicum HOM05D002450 ORTHO05D002953 1.2e-09 66.6 77 54.5
Sp2g07910 Schrenkiella parvula HOM05D002450 ORTHO05D002953 1.2e-09 66.6 93 48.4
AL8G17530 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 1.5e-09 66.2 93 48.4
Thhalv10003149m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 2.0e-09 65.9 93 47.3
PSO210G4345 Papaver somniferum HOM05D002450 ORTHO05D002953 2.0e-09 65.9 58 60.3
BcaC03g16563 Brassica carinata HOM05D002450 ORTHO05D002953 2.6e-09 65.5 78 53.8
C02p43760 Brassica napus HOM05D002450 ORTHO05D002953 2.6e-09 65.5 78 53.8
BolC2t10422H Brassica oleracea HOM05D002450 ORTHO05D002953 2.6e-09 65.5 78 53.8
arahy.Tifrunner.gnm1.ann1.89HFXA Arachis hypogaea HOM05D002450 ORTHO05D002953 1.3e-08 63.2 38 84.2
C04p24700 Brassica napus HOM05D002450 ORTHO05D002953 1.7e-08 62.8 77 53.2
BolC4t23976H Brassica oleracea HOM05D002450 ORTHO05D002953 1.7e-08 62.8 77 53.2
BcaC02g10828 Brassica carinata HOM05D002450 ORTHO05D002953 1.9e-07 59.3 75 50.7
FAN03G0823 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.1e-06 55.8 94 42.6
FAN03G3007 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.1e-06 55.8 94 42.6
FAN10G2618 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.5e-06 55.1 94 42.6
Aqoxy4G02607 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 4.6e-06 54.7 83 45.8
COL.COLO4_12766 Corchorus olitorius HOM05D002450 ORTHO05D002953 4.6e-06 54.7 44 68.2
EL10As5g23491 Beta vulgaris HOM05D002450 ORTHO05D002953 6.0e-06 54.3 65 52.3
SGA_v2.0_scaffold14G06941 Striga asiatica HOM05D002450 ORTHO05D002953 6.0e-06 54.3 85 44.7


User provided reference genes

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