Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 5.7e-65 250.8 126 100.0
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 1.7e-37 159.5 112 73.2
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.8e-34 149.4 112 69.6
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.3e-34 149.1 112 67.0
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 3.1e-26 122.1 109 56.9
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 4.4e-25 118.2 102 60.8
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.4e-23 112.5 94 63.8
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 4.2e-23 111.7 87 63.2
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 3.5e-22 108.6 109 54.1
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 4.6e-22 108.2 108 56.5
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 2.3e-21 105.9 107 57.9
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 3.9e-21 105.1 103 58.3
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 5.1e-21 104.8 109 48.6
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 2.5e-20 102.4 108 53.7
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 1.6e-19 99.8 109 47.7
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 6.2e-19 97.8 113 46.0
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.1e-18 97.1 111 50.5
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.4e-18 95.9 109 48.6
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 3.1e-18 95.5 94 55.3
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 5.3e-18 94.7 97 51.5
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 5.3e-18 94.7 117 47.0
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.5e-17 93.2 108 50.0
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 1.5e-17 93.2 97 50.5
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 2.6e-17 92.4 96 52.1
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 3.4e-17 92.0 103 56.3
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 3.4e-17 92.0 97 48.5
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 4.4e-17 91.7 111 51.4
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 5.8e-17 91.3 117 46.2
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 5.8e-17 91.3 109 51.4
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 7.6e-17 90.9 117 46.2
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 7.6e-17 90.9 114 48.2
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 1.3e-16 90.1 110 47.3
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 2.9e-16 89.0 110 49.1
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 3.8e-16 88.6 90 47.8
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.4e-16 87.4 103 49.5
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.4e-15 86.7 110 48.2
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 3.2e-15 85.5 103 48.5
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 4.2e-15 85.1 97 49.5
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 5.4e-15 84.7 105 47.6
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 7.1e-15 84.3 104 48.1
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 7.1e-15 84.3 112 48.2
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.2e-14 83.6 111 43.2
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.9e-14 80.9 95 48.4
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 1.7e-13 79.7 113 43.4
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 2.3e-13 79.3 116 48.3
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 5.1e-13 78.2 85 49.4
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 6.6e-13 77.8 110 44.5
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.1e-12 77.0 94 48.9
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.1e-12 77.0 95 49.5
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.9e-12 76.3 117 45.3
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 3.3e-12 75.5 106 46.2
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 4.3e-12 75.1 115 47.8
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 9.6e-12 73.9 140 37.9
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 4.8e-11 71.6 76 48.7
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 8.1e-11 70.9 140 36.4
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.8e-10 69.7 94 43.6
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.4e-10 69.3 105 40.0
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 5.3e-10 68.2 98 42.9
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 6.9e-10 67.8 78 51.3
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 9.0e-10 67.4 76 47.4
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 1.2e-09 67.0 140 32.9
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.5e-09 66.6 84 45.2
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 2.6e-09 65.9 108 40.7
Lalb_Chr10g0096921 Lupinus albus HOM05D005648 ORTHO05D007357 3.4e-09 65.5 67 55.2
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 5.8e-09 64.7 74 48.6
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 7.6e-09 64.3 76 43.4
Hund16647 Selenicereus undatus HOM05D005648 ORTHO05D007357 9.9e-09 63.9 98 42.9
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.7e-08 63.2 74 47.3
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.7e-08 63.2 81 44.4
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 2.2e-08 62.8 115 40.0
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 2.9e-08 62.4 118 37.3
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 2.9e-08 62.4 97 41.2
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 4.9e-08 61.6 108 37.0
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 6.4e-08 61.2 41 68.3
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 6.4e-08 61.2 115 39.1
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.1e-07 60.5 64 45.3
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.4e-07 60.1 79 44.3
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 2.4e-07 59.3 102 44.1
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 4.2e-07 58.5 108 37.0
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 5.5e-07 58.2 63 54.0
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 5.5e-07 58.2 80 43.8
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 9.3e-07 57.4 96 40.6
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 2.1e-06 56.2 108 37.0
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 2.7e-06 55.8 92 38.0
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 2.7e-06 55.8 100 38.0
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 2.7e-06 55.8 100 38.0
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 2.7e-06 55.8 108 36.1
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 7.9e-06 54.3 90 35.6


User provided reference genes

Program Settings