Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 3073.5 1542 100.0
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2680.6 1542 87.0
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2629.7 1546 85.3
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2624.4 1330 99.2
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2350.1 1548 76.4
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2344.7 1539 77.0
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2288.8 1549 74.4
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2247.6 1576 71.9
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2247.2 1551 73.4
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2244.9 1550 73.0
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2210.3 1548 71.8
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2202.2 1697 67.1
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2190.6 1549 71.3
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2186.4 1551 71.6
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2180.2 1549 71.0
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2180.2 1539 71.2
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2178.3 1549 70.9
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2176.7 1549 71.1
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2175.6 1551 70.5
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2167.9 1549 71.5
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2167.9 1549 71.5
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2165.6 1541 71.6
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2135.9 1543 69.9
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2126.3 1553 69.5
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2120.1 1543 69.5
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2119.7 1543 69.5
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2118.6 1543 69.3
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 2113.2 1612 68.7
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2102.0 1553 69.3
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2102.0 1547 69.0
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2084.7 1552 68.7
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2078.9 1531 68.6
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2077.0 1546 67.7
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2062.3 1548 68.0
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2051.9 1554 67.1
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2046.6 1542 68.0
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2042.7 1551 67.2
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2036.5 1553 66.9
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2031.9 1551 66.5
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2028.4 1550 66.6
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2025.0 1550 66.5
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2017.3 1553 66.3
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2016.5 1554 66.9
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2015.7 1599 65.0
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2013.8 1549 66.3
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2011.9 1546 65.8
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2009.6 1556 66.5
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2000.7 1559 65.5
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1991.9 1562 65.6
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1985.3 1207 82.3
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1971.4 1479 67.3
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1966.8 1502 66.8
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1964.1 1540 64.7
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1955.6 1659 62.3
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1951.4 1546 64.3
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1936.4 1550 63.5
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1912.9 1534 63.9
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1906.7 1579 63.5
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1887.8 1552 63.7
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1887.1 1557 62.3
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1885.2 1534 63.2
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1884.0 1546 63.1
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1880.5 1568 61.9
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1875.9 1544 62.2
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1848.2 1552 61.6
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1845.9 1613 60.6
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1845.5 1560 61.7
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1838.9 1548 61.8
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1834.7 1541 61.1
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1832.0 1554 60.7
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1821.2 1542 60.5
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1819.3 1564 60.6
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1818.5 1566 61.1
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1818.5 1561 61.2
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1818.1 1561 60.9
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1812.3 1541 61.5
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1811.2 1543 60.3
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1808.1 1668 57.7
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1805.0 1537 60.9
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1800.4 1567 59.9
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1799.3 1462 63.6
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1798.1 1243 73.0
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1796.6 1549 60.1
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1794.2 1542 60.7
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1794.2 1556 60.0
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1790.4 1550 59.9
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1787.7 1549 60.4
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1786.5 1542 60.6
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1781.1 1563 60.3
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1772.3 1548 61.6
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1772.3 1548 61.6
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1771.1 1544 60.2
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1763.8 1542 60.4
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1756.9 1558 58.6
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1730.3 1546 60.4
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1717.2 1537 58.6
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1699.5 1520 58.6
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1668.3 1482 58.8
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1491.1 1551 51.8
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1464.5 1029 73.0
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1323.5 891 75.6
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1199.1 678 88.9
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1094.7 1641 40.0
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 0.0e+00 1080.1 978 60.0
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 6.3e-307 1058.1 1541 42.3
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 1.8e-306 1056.6 1560 42.6
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 1.2e-294 1017.3 1492 39.9
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 2.6e-292 1009.6 1682 38.5
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 4.0e-285 985.7 1624 37.4
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.5e-268 930.6 569 81.9
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 4.8e-246 855.9 713 61.7
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.3e-240 837.8 575 74.1
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 2.9e-227 793.5 678 62.2
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.3e-223 779.6 709 56.6
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 6.9e-221 772.3 1172 42.1
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 9.0e-221 771.9 1394 35.6
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.3e-216 757.3 662 58.8
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 7.0e-205 719.2 1785 30.1
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 2.9e-187 660.6 542 63.1
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 1.2e-185 655.2 470 70.0
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 9.9e-151 539.3 667 46.5
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.8e-145 521.2 573 49.9
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 5.6e-138 496.9 513 53.4
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 6.9e-136 490.0 567 47.1
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.5e-135 488.8 545 49.7
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 5.0e-102 377.5 286 67.8
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 5.0e-86 324.3 459 42.5
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.8e-81 308.5 384 47.1
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 2.7e-79 302.0 269 59.1
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 6.8e-67 260.8 225 57.8
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 3.3e-61 241.9 397 40.1
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-49 203.4 175 56.0
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 3.5e-47 195.3 347 38.9
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.8e-43 183.0 135 62.2
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.7e-41 175.3 228 42.5
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 9.2e-40 170.6 164 52.4
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.2e-39 170.2 227 40.5
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 2.5e-37 162.5 163 51.5
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 2.4e-35 156.0 164 48.2
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 7.6e-34 151.0 910 22.2
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 4.9e-33 148.3 119 63.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 8.4e-33 147.5 106 68.9
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 5.4e-32 144.8 353 33.1
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 1.2e-31 143.7 115 65.2
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 8.7e-30 137.5 367 31.6
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.8e-28 132.5 94 71.3
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.4e-27 130.2 230 38.7
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.5e-26 126.7 85 71.8
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 6.4e-25 121.3 412 25.7
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.4e-24 120.2 144 52.1
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 2.3e-22 112.8 84 63.1
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 7.3e-21 107.8 79 62.0
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 2.4e-16 92.8 141 44.0
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 7.9e-15 87.8 56 73.2
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.0e-14 87.4 139 39.6
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 1.0e-14 87.4 161 37.9
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.8e-12 79.3 56 64.3
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.8e-11 76.6 73 53.4
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 1.2e-10 73.9 70 52.9
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 6.4e-09 68.2 97 41.2
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 1.4e-08 67.0 59 57.6
Psat1g112240 Pisum sativum HOM05D004392 ORTHO05D029174 1.3e-06 60.5 62 51.6


User provided reference genes

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