Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009713 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D112639 6.5e-37 156.8 73 100.0
Nitab4.5_0005417g0050 Nicotiana tabacum HOM05D000200 ORTHO05D000262 1.9e-07 58.9 51 52.9
Actinidia33766 Actinidia chinensis HOM05D000200 ORTHO05D000262 2.4e-07 58.5 30 83.3
Duzib106G1291 Durio zibethinus HOM05D000200 ORTHO05D000262 3.2e-07 58.2 32 78.1
COL.COLO4_15413 Corchorus olitorius HOM05D000200 ORTHO05D000262 4.1e-07 57.8 32 75.0
Lalb_Chr02g0148971 Lupinus albus HOM05D000200 ORTHO05D000262 5.4e-07 57.4 33 69.7
QL04p000770 Quercus lobata HOM05D000200 ORTHO05D000262 5.4e-07 57.4 46 52.2
Gorai.004G248700 Gossypium raimondii HOM05D000200 ORTHO05D000262 7.0e-07 57.0 45 66.7
Peaxi162Scf01260g00021 Petunia axillaris HOM05D000200 ORTHO05D000262 7.0e-07 57.0 26 88.5
arahy.Tifrunner.gnm1.ann1.9241MQ Arachis hypogaea HOM05D000200 ORTHO05D000262 9.2e-07 56.6 26 88.5
arahy.Tifrunner.gnm1.ann1.BVIK45 Arachis hypogaea HOM05D000200 ORTHO05D000262 9.2e-07 56.6 26 88.5
TPR.G26627 Trifolium pratense HOM05D000200 ORTHO05D000262 1.2e-06 56.2 32 71.9
CAN.G1256.4 Capsicum annuum HOM05D000200 ORTHO05D000262 1.6e-06 55.8 41 61.0
Medtr1g080600 Medicago truncatula HOM05D000200 ORTHO05D000262 1.6e-06 55.8 32 71.9
Nitab4.5_0003799g0030 Nicotiana tabacum HOM05D000200 ORTHO05D000262 1.6e-06 55.8 41 61.0
PGR004G2288 Punica granatum HOM05D000200 ORTHO05D000262 1.6e-06 55.8 41 65.9
Sed0003849 Sechium edule HOM05D000200 ORTHO05D000262 1.6e-06 55.8 28 75.0
Sed0015792 Sechium edule HOM05D000200 ORTHO05D000262 1.6e-06 55.8 26 88.5
Atru.chr11.2721 Acer truncatum HOM05D000200 ORTHO05D000262 2.0e-06 55.5 39 61.5
EL10Ac4g09047 Beta vulgaris HOM05D000200 ORTHO05D000262 2.0e-06 55.5 26 88.5
CANSAT11G1988 Cannabis sativa HOM05D000200 ORTHO05D000262 2.0e-06 55.5 51 58.8
CiPaw.07G070400 Carya illinoinensis HOM05D000200 ORTHO05D000262 2.0e-06 55.5 30 80.0
ClCG09G003590 Citrullus lanatus HOM05D000200 ORTHO05D000262 2.0e-06 55.5 32 71.9
SGA_v2.0_scaffold98G29337 Striga asiatica HOM05D000200 ORTHO05D000262 2.0e-06 55.5 33 69.7
Thecc.05G277200 Theobroma cacao HOM05D000200 ORTHO05D000262 2.0e-06 55.5 32 71.9
THA.LOC104808026 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 2.7e-06 55.1 30 76.7
TWI53G1369 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 2.7e-06 55.1 50 48.0
Aa31LG2G12200 Aethionema arabicum HOM05D000200 ORTHO05D000262 3.5e-06 54.7 30 76.7
ATR0697G279 Amborella trichopoda HOM05D000200 ORTHO05D000262 3.5e-06 54.7 43 60.5
A06p05650 Brassica napus HOM05D000200 ORTHO05D000262 3.5e-06 54.7 55 50.9
BraA06t23774Z Brassica rapa HOM05D000200 ORTHO05D000262 3.5e-06 54.7 55 50.9
Cc01_g18570 Coffea canephora HOM05D000200 ORTHO05D000262 3.5e-06 54.7 32 75.0
DCAR_012528 Daucus carota HOM05D000200 ORTHO05D000262 3.5e-06 54.7 33 69.7
TWI56G1283 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 3.5e-06 54.7 26 84.6
arahy.Tifrunner.gnm1.ann1.IA27LB Arachis hypogaea HOM05D000200 ORTHO05D000262 4.6e-06 54.3 30 73.3
Ca_10031_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 4.6e-06 54.3 32 68.8
Peaxi162Scf00120g00525 Petunia axillaris HOM05D000200 ORTHO05D000262 4.6e-06 54.3 27 77.8
Solyc11g006220.2 Solanum lycopersicum HOM05D000200 ORTHO05D000262 4.6e-06 54.3 41 58.5
Sopen11g002140 Solanum pennellii HOM05D000200 ORTHO05D000262 4.6e-06 54.3 41 58.5
Aa31sc20G90 Aethionema arabicum HOM05D000200 ORTHO05D000262 6.0e-06 53.9 30 73.3
A09p19480 Brassica napus HOM05D000200 ORTHO05D000262 6.0e-06 53.9 32 71.9
BraA09t37563Z Brassica rapa HOM05D000200 ORTHO05D000262 6.0e-06 53.9 32 71.9
Lj8C15G13 Lonicera japonica HOM05D000200 ORTHO05D000262 6.0e-06 53.9 30 76.7
THA.LOC104823748 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 6.0e-06 53.9 30 73.3
BcaC04g22019 Brassica carinata HOM05D000200 ORTHO05D000262 7.8e-06 53.5 30 76.7
C08p01210 Brassica napus HOM05D000200 ORTHO05D000262 7.8e-06 53.5 51 47.1
C09p24560 Brassica napus HOM05D000200 ORTHO05D000262 7.8e-06 53.5 30 76.7
BolC9t55370H Brassica oleracea HOM05D000200 ORTHO05D000262 7.8e-06 53.5 30 76.7
Ca_09435_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 7.8e-06 53.5 26 84.6
CsaV3_2G003850 Cucumis sativus L. HOM05D000200 ORTHO05D000262 7.8e-06 53.5 26 76.9
Manes.08G174100 Manihot esculenta HOM05D000200 ORTHO05D000262 7.8e-06 53.5 26 80.8
Os03g0747900 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D000262 7.8e-06 53.5 26 80.8
Phvul.007G189300 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 7.8e-06 53.5 32 68.8
Potri.009G025300 Populus trichocarpa HOM05D000200 ORTHO05D000262 7.8e-06 53.5 26 76.9
QL04p000920 Quercus lobata HOM05D000200 ORTHO05D000262 7.8e-06 53.5 39 53.8
VMungo0720G0672 Vigna mungo HOM05D000200 ORTHO05D000262 7.8e-06 53.5 32 68.8


User provided reference genes

Program Settings