Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009711 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 3.7e-154 548.1 268 100.0
CSS0026054 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 3.7e-53 212.6 242 57.9
CSS0000113 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 7.7e-43 178.3 221 54.3
Rhsim01G0254500 Rhododendron simsii HOM05D003904 ORTHO05D004378 3.9e-39 166.0 191 55.5
Actinidia09474 Actinidia chinensis HOM05D003904 ORTHO05D004378 7.4e-38 161.8 193 53.4
Rhsim13G0046900 Rhododendron simsii HOM05D003904 ORTHO05D004378 6.3e-37 158.7 195 52.8
Dinv19185 Davidia involucrata HOM05D003904 ORTHO05D004378 3.1e-36 156.4 206 49.0
Actinidia23715 Actinidia chinensis HOM05D003904 ORTHO05D004378 4.5e-35 152.5 195 51.8
Dinv12666 Davidia involucrata HOM05D003904 ORTHO05D004378 4.5e-35 152.5 195 50.8
GSVIVG01038356001 Vitis vinifera HOM05D003904 ORTHO05D004378 3.2e-33 146.4 195 50.3
Duzib211G0008 Durio zibethinus HOM05D003904 ORTHO05D004378 8.0e-32 141.7 192 49.0
Ciclev10022271m.g Citrus clementina HOM05D003904 ORTHO05D004378 5.2e-31 139.0 192 49.0
Lj2C1127G11 Lonicera japonica HOM05D003904 ORTHO05D004378 8.8e-31 138.3 192 48.4
Manes.12G046500 Manihot esculenta HOM05D003904 ORTHO05D004378 3.4e-30 136.3 192 47.4
TAR362G1128 Trochodendron aralioides HOM05D003904 ORTHO05D004378 3.4e-30 136.3 198 49.0
CSS0042014 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 2.8e-29 133.3 147 58.5
Thecc.01G222100 Theobroma cacao HOM05D003904 ORTHO05D004378 6.3e-29 132.1 185 45.9
Atru.chr6.1416 Acer truncatum HOM05D003904 ORTHO05D004378 1.4e-28 131.0 192 47.9
Nn3g20007 Nelumbo nucifera HOM05D003904 ORTHO05D004378 3.1e-28 129.8 218 44.0
Gohir.A07G200400 Gossypium hirsutum HOM05D003904 ORTHO05D004378 5.3e-28 129.0 192 44.8
Duzib138G1906 Durio zibethinus HOM05D003904 ORTHO05D004378 1.2e-27 127.9 185 45.4
MD05G1172900 Malus domestica HOM05D003904 ORTHO05D004378 1.6e-27 127.5 189 46.0
Duzib133G0063 Durio zibethinus HOM05D003904 ORTHO05D004378 2.7e-27 126.7 192 44.8
Manes.13G047800 Manihot esculenta HOM05D003904 ORTHO05D004378 3.5e-27 126.3 191 45.0
Prupe.8G200300 Prunus persica HOM05D003904 ORTHO05D004378 5.9e-27 125.6 192 45.8
MSTRG.20964 Avicennia marina HOM05D003904 ORTHO05D004378 1.0e-26 124.8 197 46.2
Hund05569 Selenicereus undatus HOM05D003904 ORTHO05D004378 1.0e-26 124.8 189 46.0
Nn1g07928 Nelumbo nucifera HOM05D003904 ORTHO05D004378 1.3e-26 124.4 224 42.0
CANSAT01G1788 Cannabis sativa HOM05D003904 ORTHO05D004378 1.7e-26 124.0 191 45.0
TAR636G3655 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.2e-26 123.6 195 46.2
RcHm_v2.0_Chr6g0284331 Rosa chinensis HOM05D003904 ORTHO05D004378 3.8e-26 122.9 188 44.7
vmacro14743 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 5.0e-26 122.5 190 45.8
CANSAT01G1918 Cannabis sativa HOM05D003904 ORTHO05D004378 6.5e-26 122.1 191 44.5
FvH4_2g18710 Fragaria vesca HOM05D003904 ORTHO05D004378 6.5e-26 122.1 212 42.0
Gorai.001G233000 Gossypium raimondii HOM05D003904 ORTHO05D004378 8.5e-26 121.7 192 43.8
Potri.002G244700 Populus trichocarpa HOM05D003904 ORTHO05D004378 8.5e-26 121.7 187 45.5
vmacro02774 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 1.1e-25 121.3 268 38.8
Nitab4.5_0000345g0040 Nicotiana tabacum HOM05D003904 ORTHO05D004378 1.5e-25 120.9 209 44.5
Gohir.D07G206700 Gossypium hirsutum HOM05D003904 ORTHO05D004378 3.2e-25 119.8 192 43.2
Cfa002841 Carpinus fangiana HOM05D003904 ORTHO05D004378 4.2e-25 119.4 190 43.7
ClCG09G008850 Citrullus lanatus HOM05D003904 ORTHO05D004378 7.2e-25 118.6 218 41.3
CsaV3_7G026020 Cucumis sativus L. HOM05D003904 ORTHO05D004378 7.2e-25 118.6 209 43.1
QL09p052136 Quercus lobata HOM05D003904 ORTHO05D004378 9.4e-25 118.2 236 39.4
MSTRG.18841 Avicennia marina HOM05D003904 ORTHO05D004378 1.6e-24 117.5 197 43.7
Gohir.D07G206500 Gossypium hirsutum HOM05D003904 ORTHO05D004378 2.1e-24 117.1 197 42.6
HanXRQChr01g0015241 Helianthus annuus HOM05D003904 ORTHO05D004378 2.1e-24 117.1 187 45.5
TWI18G1339 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 2.1e-24 117.1 192 44.8
MELO3C021054.2 Cucumis melo HOM05D003904 ORTHO05D004378 3.6e-24 116.3 190 44.7
EL10Ac7g17872 Beta vulgaris HOM05D003904 ORTHO05D004378 4.7e-24 115.9 189 43.9
Solyc09g059620.4 Solanum lycopersicum HOM05D003904 ORTHO05D004378 4.7e-24 115.9 197 43.1
Gorai.001G232800 Gossypium raimondii HOM05D003904 ORTHO05D004378 8.0e-24 115.2 197 42.1
AUR62016559 Chenopodium quinoa HOM05D003904 ORTHO05D004378 1.8e-23 114.0 182 45.6
Oeu037383.1 Olea europaea HOM05D003904 ORTHO05D004378 2.3e-23 113.6 196 41.3
CiPaw.04G104300 Carya illinoinensis HOM05D003904 ORTHO05D004378 3.0e-23 113.2 216 39.8
Sopen09g022790 Solanum pennellii HOM05D003904 ORTHO05D004378 3.0e-23 113.2 197 42.6
Potri.014G190800 Populus trichocarpa HOM05D003904 ORTHO05D004378 5.2e-23 112.5 187 41.7
Peaxi162Scf00238g00213 Petunia axillaris HOM05D003904 ORTHO05D004378 6.8e-23 112.1 197 42.1
TWI75G0190 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 8.8e-23 111.7 191 44.5
QL09p053006 Quercus lobata HOM05D003904 ORTHO05D004378 2.0e-22 110.5 190 41.6
ECA248G3101 Erigeron canadensis HOM05D003904 ORTHO05D004378 3.4e-22 109.8 187 41.2
Migut.N00625 Erythranthe guttata HOM05D003904 ORTHO05D004378 3.4e-22 109.8 197 40.6
Nitab4.5_0000045g0390 Nicotiana tabacum HOM05D003904 ORTHO05D004378 3.4e-22 109.8 196 42.3
MD10G1161300 Malus domestica HOM05D003904 ORTHO05D004378 5.7e-22 109.0 189 42.9
THA.LOC104802662 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 7.5e-22 108.6 190 40.5
SalBow6G0123 Salvia bowleyana HOM05D003904 ORTHO05D004378 9.8e-22 108.2 193 40.4
Cc01_g16830 Coffea canephora HOM05D003904 ORTHO05D004378 1.3e-21 107.8 195 40.5
CiPaw.03G146900 Carya illinoinensis HOM05D003904 ORTHO05D004378 1.7e-21 107.5 194 39.2
Actinidia31468 Actinidia chinensis HOM05D003904 ORTHO05D004378 4.8e-21 105.9 129 51.9
Eucgr.K02144 Eucalyptus grandis HOM05D003904 ORTHO05D004378 8.3e-21 105.1 194 41.2
Sed0012318 Sechium edule HOM05D003904 ORTHO05D004378 8.3e-21 105.1 190 43.2
THA.LOC104822497 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 1.1e-20 104.8 190 38.9
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.1e-20 104.8 166 45.8
THA.LOC104818966 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 1.4e-20 104.4 189 39.2
AUR62001117 Chenopodium quinoa HOM05D003904 ORTHO05D004378 1.8e-20 104.0 164 46.3
Sc17g0002200 Simmondsia chinensis HOM05D003904 ORTHO05D004378 1.8e-20 104.0 162 46.3
FAN15G2255 Fragaria x ananassa HOM05D003904 ORTHO05D004378 3.1e-20 103.2 212 39.6
FAN24G3335 Fragaria x ananassa HOM05D003904 ORTHO05D004378 4.1e-20 102.8 212 39.6
Lalb_Chr07g0194271 Lupinus albus HOM05D003904 ORTHO05D004378 4.1e-20 102.8 211 40.3
DCAR_004727 Daucus carota HOM05D003904 ORTHO05D004378 5.4e-20 102.4 220 36.8
Carub.0003s0669 Capsella rubella HOM05D003904 ORTHO05D004378 7.0e-20 102.1 221 36.7
Thhalv10021536m.g Eutrema salsugineum HOM05D003904 ORTHO05D004378 7.0e-20 102.1 218 35.8
PSO357G0115 Papaver somniferum HOM05D003904 ORTHO05D004378 7.0e-20 102.1 193 41.5
FAN27G1941 Fragaria x ananassa HOM05D003904 ORTHO05D004378 9.1e-20 101.7 212 39.2
PSO170G6902 Papaver somniferum HOM05D003904 ORTHO05D004378 9.1e-20 101.7 193 41.5
Sc05g0002020 Simmondsia chinensis HOM05D003904 ORTHO05D004378 9.1e-20 101.7 196 42.9
arahy.Tifrunner.gnm1.ann1.P0KJIP Arachis hypogaea HOM05D003904 ORTHO05D004378 1.2e-19 101.3 193 42.5
Nitab4.5_0002641g0160 Nicotiana tabacum HOM05D003904 ORTHO05D004378 1.6e-19 100.9 198 38.4
TWI36G1515 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 1.6e-19 100.9 180 43.3
Ah.08g214500 Amaranthus hybridus HOM05D003904 ORTHO05D004378 2.0e-19 100.5 192 42.7
Lsat_1_v5_gn_5_180640 Lactuca sativa HOM05D003904 ORTHO05D004378 2.0e-19 100.5 194 38.7
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 2.7e-19 100.1 197 37.6
VMungo0331G0837 Vigna mungo HOM05D003904 ORTHO05D004378 3.5e-19 99.8 201 39.8
AL3G18420 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 4.5e-19 99.4 190 39.5
SGA_v2.0_scaffold3G01636 Striga asiatica HOM05D003904 ORTHO05D004378 7.7e-19 98.6 199 36.7
Sabra14G0142300 Salix brachista HOM05D003904 ORTHO05D004378 1.0e-18 98.2 179 40.2
AT3G07170 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 1.3e-18 97.8 190 38.9
Haze_24836 Corylus avellana HOM05D003904 ORTHO05D004378 1.7e-18 97.4 187 39.0
Aqoxy5G00012 Aquilegia oxysepala HOM05D003904 ORTHO05D004378 2.3e-18 97.1 193 39.9
Lj3g0009581 Lotus japonicus HOM05D003904 ORTHO05D004378 2.3e-18 97.1 194 40.2
Sp3g06110 Schrenkiella parvula HOM05D003904 ORTHO05D004378 2.3e-18 97.1 190 38.9
Hund18422 Selenicereus undatus HOM05D003904 ORTHO05D004378 2.3e-18 97.1 146 45.9
Sed0014618 Sechium edule HOM05D003904 ORTHO05D004378 2.9e-18 96.7 154 45.5
Cpa.g.sc8.132 Carica papaya HOM05D003904 ORTHO05D004378 3.8e-18 96.3 133 48.1
Haze_24839 Corylus avellana HOM05D003904 ORTHO05D004378 3.8e-18 96.3 180 39.4
Phvul.008G130000 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 5.0e-18 95.9 192 39.6
Ca_23234_v3 Cicer arietinum L. HOM05D003904 ORTHO05D004378 1.9e-17 94.0 192 40.1
Gohir.A07G200150 Gossypium hirsutum HOM05D003904 ORTHO05D004378 3.3e-17 93.2 114 48.2
Glyma.08G349900 Glycine max HOM05D003904 ORTHO05D004378 4.2e-17 92.8 192 40.1
Phvul.010G020800 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 4.2e-17 92.8 192 39.6
COL.COLO4_15645 Corchorus olitorius HOM05D003904 ORTHO05D004378 5.5e-17 92.4 116 50.9
Glyma.03G064800 Glycine max HOM05D003904 ORTHO05D004378 5.5e-17 92.4 192 38.5
BolC5t34670H Brassica oleracea HOM05D003904 ORTHO05D004378 9.5e-17 91.7 190 36.3
Lalb_Chr12g0209941 Lupinus albus HOM05D003904 ORTHO05D004378 1.2e-16 91.3 192 40.1
SGA_v2.0_scaffold18G08327 Striga asiatica HOM05D003904 ORTHO05D004378 1.6e-16 90.9 199 39.7
CDE05G2788 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 2.1e-16 90.5 197 37.6
C05p60200 Brassica napus HOM05D003904 ORTHO05D004378 2.8e-16 90.1 191 39.8
CARHR081810 Cardamine hirsuta HOM05D003904 ORTHO05D004378 2.8e-16 90.1 190 39.5
Psat4g200440 Pisum sativum HOM05D003904 ORTHO05D004378 3.6e-16 89.7 194 38.7
BraA05t22830Z Brassica rapa HOM05D003904 ORTHO05D004378 4.7e-16 89.4 192 39.1
arahy.Tifrunner.gnm1.ann1.YG552F Arachis hypogaea HOM05D003904 ORTHO05D004378 1.0e-15 88.2 145 45.5
Os04g0378200 Oryza sativa ssp. japonica HOM05D003904 ORTHO05D004378 1.4e-15 87.8 188 38.3
Sabra02G0186200 Salix brachista HOM05D003904 ORTHO05D004378 2.3e-15 87.0 111 50.5
CDE05G3121 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 4.0e-15 86.3 197 37.6
PGR044G0663 Punica granatum HOM05D003904 ORTHO05D004378 6.8e-15 85.5 193 35.8
PGSC0003DMG400017482 Solanum tuberosum HOM05D003904 ORTHO05D004378 6.8e-15 85.5 123 46.3
Nitab4.5_0002616g0050 Nicotiana tabacum HOM05D003904 ORTHO05D004378 8.9e-15 85.1 198 35.4
BcaC05g29846 Brassica carinata HOM05D003904 ORTHO05D004378 2.0e-14 84.0 190 35.8
A03p35130 Brassica napus HOM05D003904 ORTHO05D004378 2.0e-14 84.0 186 37.1
Medtr8g012995 Medicago truncatula HOM05D003904 ORTHO05D004378 2.0e-14 84.0 189 38.1
TPR.G17124 Trifolium pratense HOM05D003904 ORTHO05D004378 2.0e-14 84.0 193 38.3
unitig_736.g22341 Utricularia gibba HOM05D003904 ORTHO05D004378 2.0e-14 84.0 197 36.0
C03p42720 Brassica napus HOM05D003904 ORTHO05D004378 4.4e-14 82.8 186 37.6
Zm00001eb085860 Zea mays HOM05D003904 ORTHO05D004378 4.4e-14 82.8 191 37.2
Glyma.16G100600 Glycine max HOM05D003904 ORTHO05D004378 5.7e-14 82.4 192 38.0
BolC3t16542H Brassica oleracea HOM05D003904 ORTHO05D004378 1.3e-13 81.3 186 37.1
SGA_v2.0_scaffold6G03227 Striga asiatica HOM05D003904 ORTHO05D004378 1.7e-13 80.9 197 31.5
Zm00001eb420700 Zea mays HOM05D003904 ORTHO05D004378 2.2e-13 80.5 186 37.6
Migut.D02496 Erythranthe guttata HOM05D003904 ORTHO05D004378 2.8e-13 80.1 141 41.8
AUR62035029 Chenopodium quinoa HOM05D003904 ORTHO05D004378 3.7e-13 79.7 137 41.6
BcaC05g29749 Brassica carinata HOM05D003904 ORTHO05D004378 4.9e-13 79.3 190 34.7
BraA06t26812Z Brassica rapa HOM05D003904 ORTHO05D004378 3.2e-12 76.6 189 36.0
ATR0609G102 Amborella trichopoda HOM05D003904 ORTHO05D004378 1.2e-11 74.7 200 37.5
Sp2g19090 Schrenkiella parvula HOM05D003904 ORTHO05D004378 1.2e-11 74.7 187 35.8
HPP92_021424 Vanilla planifolia HOM05D003904 ORTHO05D004378 1.7e-10 70.9 191 31.9
BcaC06g30768 Brassica carinata HOM05D003904 ORTHO05D004378 2.9e-10 70.1 185 35.1
C07p39350 Brassica napus HOM05D003904 ORTHO05D004378 3.9e-10 69.7 188 34.0
BolC7t44455H Brassica oleracea HOM05D003904 ORTHO05D004378 5.0e-10 69.3 188 35.6
Oeu031826.2 Olea europaea HOM05D003904 ORTHO05D004378 2.5e-09 67.0 165 33.9
A06p38980 Brassica napus HOM05D003904 ORTHO05D004378 3.3e-09 66.6 188 35.1
CARHR183220 Cardamine hirsuta HOM05D003904 ORTHO05D004378 7.3e-09 65.5 178 32.6
BraA03t12693Z Brassica rapa HOM05D003904 ORTHO05D004378 2.1e-08 63.9 116 38.8
Aa31LG5G17730 Aethionema arabicum HOM05D003904 ORTHO05D004378 3.6e-08 63.2 112 37.5
AT5G48680 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 4.7e-08 62.8 188 34.6
AL8G21740 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 1.0e-07 61.6 190 34.2
Carub.0008s0842 Capsella rubella HOM05D003904 ORTHO05D004378 6.8e-07 58.9 191 31.4
Glyma.18G166400 Glycine max HOM05D003904 ORTHO05D004378 1.5e-06 57.8 130 36.9
Aa31sc370G10 Aethionema arabicum HOM05D003904 ORTHO05D004378 5.8e-06 55.8 192 30.7
CAN.G5.45 Capsicum annuum HOM05D003904 ORTHO05D004378 7.5e-06 55.5 55 54.5


User provided reference genes

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