Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 9.7e-157 557.0 327 100.0
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.6e-151 539.7 337 95.5
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 3.5e-122 442.2 258 86.8
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 4.0e-118 428.7 260 83.8
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 3.4e-117 425.6 255 84.3
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 4.9e-116 421.8 261 82.4
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.4e-115 419.5 259 82.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 8.6e-113 411.0 258 82.9
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.5e-112 410.2 259 79.9
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.9e-112 409.8 260 78.8
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 5.6e-112 408.3 257 81.3
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 6.2e-111 404.8 254 77.6
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 8.0e-111 404.4 254 80.7
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 1.1e-110 404.1 250 81.6
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.8e-110 403.3 252 79.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.8e-110 403.3 255 78.4
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 3.1e-110 402.5 260 78.5
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.2e-110 401.7 260 78.8
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 6.8e-110 401.4 266 78.2
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 8.9e-110 401.0 260 77.3
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.2e-109 400.6 261 79.3
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.2e-109 400.6 254 78.0
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 3.4e-109 399.1 253 78.3
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 4.4e-109 398.7 260 77.3
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 4.4e-109 398.7 256 78.1
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 5.8e-109 398.3 246 81.3
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 7.5e-109 397.9 262 79.0
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.3e-108 397.1 262 77.9
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 2.2e-108 396.4 245 80.0
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 2.2e-108 396.4 259 77.6
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.9e-108 396.0 252 79.4
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 3.7e-108 395.6 253 79.4
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.7e-108 395.6 245 79.6
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.9e-108 395.2 259 77.6
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 6.4e-108 394.8 255 78.0
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.4e-107 393.7 257 78.2
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.9e-107 393.3 252 77.8
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 1.9e-107 393.3 252 79.8
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.9e-107 393.3 245 79.2
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 5.4e-107 391.7 259 76.8
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 5.4e-107 391.7 252 78.2
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 7.1e-107 391.3 259 77.2
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 9.2e-107 391.0 256 78.1
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 1.6e-106 390.2 259 76.8
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 6.0e-106 388.3 257 76.7
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 7.8e-106 387.9 281 73.3
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 7.8e-106 387.9 250 78.8
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 1.0e-105 387.5 255 78.0
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 1.7e-105 386.7 260 76.5
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.3e-105 386.3 260 75.4
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.3e-105 386.3 257 76.3
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 3.0e-105 386.0 256 77.0
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 3.9e-105 385.6 257 78.2
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 5.1e-105 385.2 246 79.3
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.1e-104 384.0 257 76.7
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 1.1e-104 384.0 254 76.0
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 1.5e-104 383.6 251 76.5
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 2.5e-104 382.9 255 76.5
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 4.3e-104 382.1 284 71.1
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 5.6e-104 381.7 257 76.3
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 7.3e-104 381.3 258 75.6
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.6e-103 380.2 249 76.3
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 6.2e-103 378.3 261 72.8
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 8.1e-103 377.9 271 73.4
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.1e-102 377.5 258 73.6
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.4e-102 377.1 251 74.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 4.0e-102 375.6 260 73.1
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 8.9e-102 374.4 260 72.7
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.5e-101 373.6 261 73.6
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.0e-101 373.2 251 75.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 7.5e-101 371.3 254 73.2
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 9.9e-101 370.9 243 74.5
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 9.9e-101 370.9 254 72.8
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.7e-100 370.2 253 71.9
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.7e-100 370.2 256 73.4
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.9e-100 369.4 245 74.7
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 3.7e-100 369.0 326 63.2
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 3.7e-100 369.0 254 72.4
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 4.9e-100 368.6 244 75.0
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 6.4e-100 368.2 254 71.3
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 8.3e-100 367.9 250 73.2
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 8.3e-100 367.9 244 74.6
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.1e-99 367.5 252 71.4
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.4e-99 366.3 253 71.5
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 2.4e-99 366.3 253 71.1
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.4e-99 366.3 253 71.5
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 4.1e-99 365.5 249 71.9
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.0e-97 360.9 261 72.8
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 8.6e-97 357.8 252 70.6
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 2.5e-96 356.3 252 71.8
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 2.8e-95 352.8 259 69.1
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.2e-93 347.4 245 66.1
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.1e-88 330.9 243 66.7
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.1e-88 330.9 251 64.9
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.9e-88 330.1 251 64.9
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.9e-88 330.1 243 66.7
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.9e-88 330.1 250 76.0
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 3.1e-86 322.8 254 63.0
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 9.9e-85 317.8 211 74.9
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.1e-78 297.7 251 64.9
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 9.3e-75 284.6 244 58.6
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.1e-72 277.7 253 58.9
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.5e-67 260.0 260 49.6
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 5.5e-67 258.8 250 52.0
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 3.0e-65 253.1 263 48.3
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 9.6e-64 248.1 165 75.2
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.5e-56 223.4 166 71.1
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 9.7e-56 221.5 166 71.7
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.2e-55 220.3 134 78.4
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 4.8e-55 219.2 141 78.7
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.1e-54 218.0 238 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 9.0e-54 214.9 201 53.7
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-51 207.6 187 62.0
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.5e-45 186.0 127 76.4
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.3e-44 184.5 184 58.2
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 7.9e-42 175.3 165 60.6
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.1e-41 172.6 109 76.1
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 4.8e-39 166.0 109 72.5
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.4e-38 164.5 167 58.1
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 3.2e-35 153.3 117 66.7
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.1e-34 149.1 106 70.8
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 4.4e-32 142.9 105 73.3
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 2.2e-31 140.6 94 76.6
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.1e-30 136.7 106 61.3
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.0e-28 131.7 74 81.1
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.5e-28 129.0 73 86.3
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.2e-24 118.2 92 72.8
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 3.4e-24 116.7 81 70.4
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 4.8e-23 112.8 244 31.1
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.2e-21 108.2 80 67.5
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 5.0e-20 102.8 80 58.8
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.1e-18 97.4 82 57.3
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 4.0e-17 93.2 56 80.4
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.0e-16 90.9 92 55.4
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.4e-16 90.1 55 80.0
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 5.7e-16 89.4 50 84.0
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 1.1e-14 85.1 96 52.1
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.5e-13 80.1 185 30.3
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.9e-13 79.3 128 38.3
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 6.6e-12 75.9 59 54.2
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.6e-11 72.8 147 32.0
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 2.3e-09 67.4 47 72.3
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 4.0e-09 66.6 70 54.3
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 8.9e-09 65.5 45 66.7


User provided reference genes

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