Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009274 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 4.3e-164 581.3 291 100.0
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.0e-101 374.0 292 72.3
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.1e-87 327.4 192 87.0
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 6.8e-77 291.6 190 75.3
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 1.4e-74 283.9 193 74.1
CSS0018975 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.6e-73 280.4 201 73.1
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 4.5e-73 278.9 200 70.5
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 3.8e-72 275.8 186 72.6
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 8.6e-72 274.6 178 75.8
Actinidia06676 Actinidia chinensis HOM05D003159 ORTHO05D003780 1.1e-71 274.2 203 70.4
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.9e-71 273.5 191 71.7
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 2.5e-71 273.1 182 73.1
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 1.2e-70 270.8 186 69.9
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 1.2e-70 270.8 204 70.1
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 1.6e-70 270.4 190 69.5
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 2.1e-70 270.0 197 69.0
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 3.6e-70 269.2 178 74.2
Cpa.g.sc162.3 Carica papaya HOM05D003159 ORTHO05D003780 6.1e-70 268.5 173 76.9
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 6.1e-70 268.5 182 72.0
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 6.1e-70 268.5 182 72.0
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 6.1e-70 268.5 177 74.6
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 8.0e-70 268.1 198 68.7
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 1.0e-69 267.7 186 72.0
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 4.0e-69 265.8 181 72.4
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 5.2e-69 265.4 178 74.2
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 6.8e-69 265.0 196 68.9
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 6.8e-69 265.0 196 68.9
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 6.8e-69 265.0 190 68.4
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 8.9e-69 264.6 173 75.1
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 8.9e-69 264.6 173 74.6
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 1.5e-68 263.8 178 73.0
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 1.5e-68 263.8 180 71.7
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 2.6e-68 263.1 195 67.2
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 2.6e-68 263.1 181 71.8
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 3.4e-68 262.7 190 67.9
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 4.4e-68 262.3 173 74.0
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 4.4e-68 262.3 173 74.0
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 7.5e-68 261.5 190 67.9
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 7.5e-68 261.5 173 73.4
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 7.5e-68 261.5 191 68.6
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 1.3e-67 260.8 173 73.4
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 1.3e-67 260.8 177 72.9
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.3e-67 260.8 202 66.8
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.7e-67 260.4 175 70.9
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.7e-67 260.4 201 65.7
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 1.7e-67 260.4 186 68.3
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 2.2e-67 260.0 178 71.3
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 2.2e-67 260.0 182 71.4
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 2.8e-67 259.6 194 67.0
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 2.8e-67 259.6 201 65.2
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 3.7e-67 259.2 201 65.2
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 3.7e-67 259.2 187 68.4
Sabra13G0039800 Salix brachista HOM05D003159 ORTHO05D003780 3.7e-67 259.2 178 71.9
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 4.9e-67 258.8 181 71.3
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 6.3e-67 258.5 178 70.8
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 6.3e-67 258.5 207 64.7
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 1.1e-66 257.7 180 70.0
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 1.1e-66 257.7 198 65.7
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 1.1e-66 257.7 173 73.4
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 1.4e-66 257.3 182 69.8
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 1.8e-66 256.9 182 69.2
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 2.4e-66 256.5 207 64.3
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 2.4e-66 256.5 187 67.9
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 4.1e-66 255.8 180 70.0
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 4.1e-66 255.8 186 67.2
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 5.4e-66 255.4 186 67.2
Gohir.A11G250300 Gossypium hirsutum HOM05D003159 ORTHO05D003780 7.0e-66 255.0 187 67.9
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 9.2e-66 254.6 176 70.5
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.2e-66 254.6 180 69.4
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.2e-65 254.2 180 69.4
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 1.6e-65 253.8 196 65.8
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 2.7e-65 253.1 207 63.8
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 3.5e-65 252.7 197 65.0
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 3.5e-65 252.7 192 65.1
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 3.5e-65 252.7 169 74.6
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 4.5e-65 252.3 181 69.6
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 7.8e-65 251.5 176 69.9
DCAR_028952 Daucus carota HOM05D003159 ORTHO05D003780 1.0e-64 251.1 173 68.8
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.3e-64 250.8 180 68.3
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.7e-64 250.4 176 69.9
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 2.9e-64 249.6 188 68.1
FAN12G0237 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.9e-64 249.6 172 71.5
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 2.9e-64 249.6 213 61.5
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 2.9e-64 249.6 176 70.5
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 5.0e-64 248.8 189 65.1
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 8.6e-64 248.1 173 68.2
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 1.1e-63 247.7 181 66.3
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 1.5e-63 247.3 181 68.5
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 2.5e-63 246.5 187 66.3
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 4.3e-63 245.7 177 67.8
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 4.3e-63 245.7 179 66.5
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 5.6e-63 245.4 177 68.4
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 5.6e-63 245.4 176 68.8
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 9.5e-63 244.6 177 68.4
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 1.2e-62 244.2 201 63.2
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 1.2e-62 244.2 177 68.9
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 2.1e-62 243.4 177 67.8
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 2.8e-62 243.0 177 68.4
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 2.8e-62 243.0 194 64.9
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 8.0e-62 241.5 174 68.4
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 8.0e-62 241.5 174 68.4
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 1.0e-61 241.1 177 67.8
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 1.4e-61 240.7 174 67.8
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 1.4e-61 240.7 174 67.8
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 1.4e-61 240.7 174 67.8
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 1.8e-61 240.4 193 61.1
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 1.8e-61 240.4 193 61.1
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 1.8e-61 240.4 173 66.5
PSO782G2873 Papaver somniferum HOM05D003159 ORTHO05D003780 3.1e-61 239.6 193 60.6
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 5.2e-61 238.8 169 69.8
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 5.2e-61 238.8 169 69.8
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 6.8e-61 238.4 169 70.4
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 6.8e-61 238.4 169 70.4
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 6.8e-61 238.4 198 62.6
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 4.4e-60 235.7 169 69.2
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 4.4e-60 235.7 178 63.5
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 9.8e-60 234.6 182 63.7
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 1.3e-59 234.2 172 67.4
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 3.7e-59 232.6 182 61.5
Haze_20967 Corylus avellana HOM05D003159 ORTHO05D003780 1.1e-58 231.1 157 72.0
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 1.1e-58 231.1 183 60.1
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 1.4e-58 230.7 177 63.3
CDE05G1140 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.9e-58 230.3 173 65.3
SHI06091 Sapria himalayana HOM05D003159 ORTHO05D003780 2.0e-57 226.9 182 61.5
SEGI_17525 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 6.6e-56 221.9 169 64.5
FAN12G4313 Fragaria x ananassa HOM05D003159 ORTHO05D003780 8.0e-54 214.9 150 70.0
FAN11G2158 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.8e-53 213.8 150 70.0
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 6.8e-53 211.8 163 68.1
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 1.4e-50 204.1 167 59.9
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 4.1e-50 202.6 170 62.4
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.2e-49 201.1 164 59.8
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 4.6e-49 199.1 154 63.0
AagrBONN_evm.TU.Sc2ySwM_368.1733 Anthoceros agrestis HOM05D003159 ORTHO05D003780 6.0e-49 198.7 179 55.3
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 1.9e-47 193.7 177 54.8
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 4.7e-46 189.1 167 56.3
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 1.5e-44 184.1 149 59.7
Zm00001eb284760 Zea mays HOM05D003159 ORTHO05D003780 7.5e-44 181.8 149 59.7
FAN02G3581 Fragaria x ananassa HOM05D001720 ORTHO05D001813 3.0e-40 169.9 122 68.9
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 5.1e-40 169.1 161 57.1
Nn1g02653 Nelumbo nucifera HOM05D003159 ORTHO05D003780 1.5e-39 167.5 97 82.5
TPR.G10778 Trifolium pratense HOM05D003159 ORTHO05D003780 1.5e-39 167.5 126 65.9
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 2.5e-39 166.8 163 48.5
FAN20G0704 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.3e-39 166.4 119 68.9
AUR62033001 Chenopodium quinoa HOM05D003159 ORTHO05D044021 3.6e-38 162.9 147 59.2
FAN09G3226 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.8e-35 152.9 90 82.2
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 4.9e-35 152.5 118 66.9
Ciclev10003992m.g Citrus clementina HOM05D003159 ORTHO05D003780 4.6e-33 146.0 185 48.1
Lalb_Chr06g0166711 Lupinus albus HOM05D003159 ORTHO05D003780 5.1e-32 142.5 82 81.7
Lalb_Chr06g0166751 Lupinus albus HOM05D003159 ORTHO05D003780 5.1e-32 142.5 82 81.7
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 4.4e-28 129.4 266 36.5
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 3.8e-27 126.3 169 40.8
Peaxi162Scf00135g01116 Petunia axillaris HOM05D003159 ORTHO05D003780 3.8e-27 126.3 99 64.6
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 8.7e-24 115.2 150 42.7
Lalb_Chr06g0166741 Lupinus albus HOM05D003159 ORTHO05D003780 5.6e-23 112.5 70 72.9
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 9.9e-20 101.7 169 38.5
AUR62010228 Chenopodium quinoa HOM05D003159 ORTHO05D003780 2.2e-19 100.5 64 73.4
Nitab4.5_0000261g0140 Nicotiana tabacum HOM05D003159 ORTHO05D003780 4.2e-18 96.3 88 61.4
Atru.chr2.868 Acer truncatum HOM05D003159 ORTHO05D003780 5.1e-16 89.4 99 49.5
Nitab4.5_0001462g0060 Nicotiana tabacum HOM05D003159 ORTHO05D003780 5.6e-15 85.9 51 76.5
Lalb_Chr06g0166701 Lupinus albus HOM05D003159 ORTHO05D003780 4.8e-14 82.8 50 78.0
Sabra19G0025800 Salix brachista HOM05D003159 ORTHO05D003780 2.0e-12 77.4 53 66.0
RcHm_v2.0_Chr6g0278951 Rosa chinensis HOM05D003159 ORTHO05D003780 4.5e-12 76.3 50 68.0
FAN09G4428 Fragaria x ananassa HOM05D003159 ORTHO05D003780 6.5e-11 72.4 44 75.0
RcHm_v2.0_Chr7g0214531 Rosa chinensis HOM05D003159 ORTHO05D003780 8.4e-11 72.0 50 66.0
Atru.chr2.869 Acer truncatum HOM05D003159 ORTHO05D003780 4.2e-10 69.7 37 86.5
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 6.0e-09 65.9 31 93.5
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 5.7e-07 59.3 31 87.1
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 9.6e-07 58.5 31 83.9
Psat0s4720g0080 Pisum sativum HOM05D002956 ORTHO05D008031 2.1e-06 57.4 34 79.4
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 2.1e-06 57.4 31 83.9
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.8e-06 57.0 31 83.9
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 4.8e-06 56.2 31 77.4
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 4.8e-06 56.2 31 83.9
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 4.8e-06 56.2 31 77.4


User provided reference genes

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