Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 3216.8 1704 100.0
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2824.7 1503 100.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2718.7 1736 82.7
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2684.8 1736 82.2
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2445.2 1743 75.4
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2414.0 1739 76.4
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2393.6 1740 73.8
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2387.5 1731 74.1
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2382.8 1742 74.3
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2372.8 1741 73.6
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2362.4 1738 73.5
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2336.6 1735 73.9
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2328.5 1738 71.7
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2323.5 1737 72.7
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2321.6 1739 73.6
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2313.9 1733 73.2
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2310.8 1738 71.7
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2308.1 1739 73.1
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2307.7 1738 72.2
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2304.2 1735 71.9
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2304.2 1736 72.2
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2282.7 1756 69.9
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2282.7 1729 72.2
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2278.4 1733 71.4
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2266.1 1738 70.1
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2260.3 1737 70.0
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2257.3 1753 70.5
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2252.6 1741 69.7
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2248.8 1738 70.8
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2248.4 1731 70.0
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2247.2 1737 69.8
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2242.6 1773 69.9
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2242.6 1738 69.5
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2242.6 1734 71.3
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2241.8 1780 69.8
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2241.5 1741 69.7
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2224.5 1788 68.2
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2213.7 1730 71.5
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2212.6 1731 71.7
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2206.8 1544 75.8
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2201.8 1737 69.8
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2200.6 1737 71.0
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2182.9 1739 68.3
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2182.5 1777 69.6
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2182.5 1733 68.6
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2181.4 1738 68.0
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2179.8 1735 67.9
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2177.5 1737 68.7
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2173.3 1888 63.9
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2167.9 1910 65.5
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2158.6 1727 68.0
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2151.7 1801 65.6
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2146.3 1740 67.9
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2127.8 2035 60.4
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 2126.3 1510 75.4
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2124.4 1733 67.6
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2123.6 1746 67.3
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2115.1 1738 67.0
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2110.1 1715 68.2
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2095.1 1713 67.7
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2083.5 1738 65.2
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2073.5 1734 67.1
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2072.7 1708 67.1
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2055.4 1696 66.5
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2032.3 1669 67.9
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2022.3 1759 65.0
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2020.4 1743 65.5
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2011.1 1749 65.2
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2005.3 1817 61.1
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2002.6 1735 65.4
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 1999.2 1739 66.0
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1994.5 1760 63.1
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1955.6 1755 64.3
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 1954.1 1843 60.8
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1948.3 1748 64.4
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1947.9 1748 64.4
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1932.1 1739 63.5
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1929.8 1750 64.1
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1927.9 1733 62.8
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 1916.7 1737 63.3
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1909.8 1734 62.2
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1907.5 1738 61.3
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1905.6 1744 64.0
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1897.5 1733 62.3
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1895.9 1733 62.1
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1883.6 1718 62.5
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1879.0 1733 61.7
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1791.2 1740 60.7
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1782.3 1208 76.6
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1691.8 1713 57.6
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1661.4 1826 55.5
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1598.9 1276 70.0
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1590.9 1817 52.8
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1583.2 1300 69.0
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1574.3 1223 72.2
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1510.0 1655 53.8
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1481.1 1089 73.0
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1471.8 1746 52.7
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1421.8 1231 65.3
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1388.6 1504 56.9
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1329.7 1733 49.0
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1245.3 1102 66.2
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1223.8 769 81.0
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1176.8 940 67.4
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 8.3e-308 1061.2 1160 56.6
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 1.1e-291 1007.7 692 76.9
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 2.7e-290 1003.0 871 57.6
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.5e-280 970.7 682 73.5
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.9e-267 927.2 880 64.4
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.0e-228 798.5 1004 52.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 1.1e-216 758.4 1150 43.7
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 2.3e-209 734.2 449 84.0
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 2.2e-207 727.6 465 79.6
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 7.2e-187 659.4 1138 36.6
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 1.9e-142 511.9 1169 31.7
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 7.1e-134 483.4 573 53.2
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 9.3e-126 456.4 527 59.2
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.7e-98 364.8 381 55.6
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.4e-94 352.8 239 77.8
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 5.5e-94 350.9 299 64.5
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.1e-93 349.0 297 61.6
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 5.7e-91 340.9 214 77.6
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.1e-89 334.7 262 69.8
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.2e-79 302.4 410 48.8
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 5.0e-79 301.2 198 79.3
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 3.2e-78 298.5 205 75.6
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.2e-77 296.6 734 30.0
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 8.5e-71 273.9 1048 25.7
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.0e-68 265.4 198 69.2
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 3.7e-66 258.5 226 64.2
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.9e-62 246.1 521 36.3
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.1e-57 228.4 199 62.3
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 6.6e-55 221.1 245 53.9
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.2e-53 214.5 222 56.8
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 4.3e-38 165.2 89 84.3
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.2e-35 157.1 143 75.5
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 8.6e-31 141.0 116 67.2
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.5e-30 139.4 148 56.8
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.2e-29 137.1 84 77.4
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.1e-28 134.0 111 64.0
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 2.4e-28 132.9 110 68.2
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 2.0e-27 129.8 84 72.6
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 1.3e-26 127.1 75 86.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 3.8e-26 125.6 105 67.6
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.2e-24 120.6 141 51.1
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 2.1e-24 119.8 82 76.8
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 3.5e-24 119.0 69 87.0
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.9e-17 96.7 107 53.3
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 5.4e-17 95.1 68 67.6
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.6e-16 93.6 73 68.5
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.6e-16 93.6 103 50.5
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.7e-16 92.8 58 77.6
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.7e-16 92.8 58 77.6
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 4.6e-16 92.0 85 54.1
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 2.3e-15 89.7 58 75.9
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 1.1e-14 87.4 82 54.9
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 4.8e-13 82.0 41 90.2
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.4e-12 80.5 95 48.4
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 2.4e-12 79.7 50 86.0
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 3.4e-11 75.9 77 55.8
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 9.9e-11 74.3 48 72.9
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 9.9e-11 74.3 171 34.5
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 6.4e-10 71.6 36 88.9
TPR.G21790 Trifolium pratense HOM05D003986 ORTHO05D411817 3.0e-07 62.8 51 68.6
DCAR_017313 Daucus carota HOM05D000792 ORTHO05D004195 4.3e-06 58.9 190 32.1
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 5.6e-06 58.5 111 34.2
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 5.6e-06 58.5 59 52.5


User provided reference genes

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