Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.6e-67 259.2 128 100.0
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 9.4e-31 137.1 140 54.3
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.9e-23 112.8 87 71.3
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 4.7e-22 108.2 88 69.3
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 4.0e-21 105.1 140 43.6
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 5.7e-20 101.3 143 44.8
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 9.7e-20 100.5 111 58.6
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.7e-19 99.8 141 44.7
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 1.7e-19 99.8 141 43.3
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 3.7e-19 98.6 89 58.4
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 3.1e-18 95.5 141 41.1
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.6e-17 92.4 139 40.3
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 4.5e-17 91.7 104 57.7
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 7.7e-17 90.9 140 37.9
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.3e-16 90.1 87 54.0
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.7e-16 89.7 109 50.5
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 3.8e-16 88.6 89 53.9
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.9e-15 86.3 87 58.6
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 7.2e-15 84.3 141 38.3
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 7.2e-15 84.3 140 39.3
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 7.2e-15 84.3 89 53.9
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.2e-14 83.6 88 52.3
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 3.6e-14 82.0 87 56.3
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 3.6e-14 82.0 86 55.8
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.0e-14 80.9 140 37.9
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.8e-13 79.7 86 50.0
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 2.3e-13 79.3 88 48.9
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 5.2e-13 78.2 87 50.6
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 5.2e-13 78.2 141 36.2
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 5.2e-13 78.2 86 53.5
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.8e-13 77.8 88 51.1
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.8e-13 77.4 140 37.9
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.2e-12 77.0 100 47.0
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 5.7e-12 74.7 98 48.0
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 7.5e-12 74.3 88 53.4
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 7.5e-12 74.3 88 50.0
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 7.5e-12 74.3 87 48.3
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 9.8e-12 73.9 89 48.3
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.3e-11 73.6 89 47.2
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 1.3e-11 73.6 89 47.2
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.8e-11 72.4 91 50.5
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 3.7e-11 72.0 83 53.0
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 4.8e-11 71.6 93 47.3
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 8.3e-11 70.9 87 44.8
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.1e-10 70.5 88 52.3
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.4e-10 70.1 93 45.2
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.4e-10 70.1 86 47.7
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 1.4e-10 70.1 115 38.3
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.8e-10 69.7 87 44.8
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.4e-10 69.3 87 47.1
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 2.4e-10 69.3 87 44.8
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 3.1e-10 68.9 90 50.0
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 5.4e-10 68.2 87 46.0
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 5.4e-10 68.2 115 37.4
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 7.0e-10 67.8 87 46.0
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 9.1e-10 67.4 114 37.7
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 9.1e-10 67.4 89 49.4
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 1.2e-09 67.0 86 48.8
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.2e-09 67.0 87 43.7
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.6e-09 66.6 86 47.7
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.6e-09 66.6 86 45.3
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 2.0e-09 66.2 86 43.0
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.0e-09 66.2 86 43.0
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 5.9e-09 64.7 82 48.8
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 5.9e-09 64.7 85 47.1
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 7.7e-09 64.3 88 47.7
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 7.7e-09 64.3 100 43.0
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 7.7e-09 64.3 91 48.4
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.0e-08 63.9 102 43.1
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.0e-08 63.9 87 46.0
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.3e-08 63.5 105 40.0
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.7e-08 63.2 82 47.6
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 2.2e-08 62.8 85 42.4
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 2.2e-08 62.8 100 42.0
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 3.8e-08 62.0 102 39.2
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 3.8e-08 62.0 83 48.2
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 5.0e-08 61.6 85 45.9
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 5.0e-08 61.6 100 43.0
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 8.5e-08 60.8 131 35.1
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.1e-07 60.5 82 46.3
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 1.5e-07 60.1 131 35.1
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.5e-07 60.1 131 35.1
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.5e-07 60.1 131 35.1
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 2.5e-07 59.3 86 46.5
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 5.5e-07 58.2 140 35.7
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 5.5e-07 58.2 86 45.3
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 5.5e-07 58.2 85 44.7
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 9.4e-07 57.4 83 45.8
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 9.4e-07 57.4 131 34.4
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 9.4e-07 57.4 85 42.4
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.2e-06 57.0 86 43.0
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 2.1e-06 56.2 140 32.1
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 2.7e-06 55.8 83 45.8
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.7e-06 55.8 86 44.2


User provided reference genes

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