Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008587 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 3.2e-145 518.5 277 100.0
CSS0010724 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 9.8e-134 480.3 277 93.5
CSS0002368 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 9.5e-113 410.6 277 80.1
CSS0012964 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006683 2.0e-62 243.4 122 95.1
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 3.1e-55 219.5 121 85.1
Actinidia35238 Actinidia chinensis HOM05D000070 ORTHO05D006683 9.0e-55 218.0 121 83.5
Dinv20210 Davidia involucrata HOM05D000070 ORTHO05D006683 4.5e-54 215.7 121 85.1
Dinv14946 Davidia involucrata HOM05D000070 ORTHO05D006683 5.9e-54 215.3 121 85.1
Duzib213G1081 Durio zibethinus HOM05D000070 ORTHO05D006683 1.4e-52 210.7 121 81.0
Gohir.A01G060800 Gossypium hirsutum HOM05D000070 ORTHO05D006683 1.4e-52 210.7 121 81.8
Gohir.D01G047300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 1.4e-52 210.7 121 81.8
Gorai.002G066800 Gossypium raimondii HOM05D000070 ORTHO05D006683 1.4e-52 210.7 121 81.8
Cfa020618 Carpinus fangiana HOM05D000070 ORTHO05D006683 3.2e-52 209.5 121 80.2
Haze_09387 Corylus avellana HOM05D000070 ORTHO05D006683 4.2e-52 209.1 121 80.2
CiPaw.11G166700 Carya illinoinensis HOM05D000070 ORTHO05D006683 5.5e-52 208.8 121 79.3
Manes.15G090100 Manihot esculenta HOM05D000070 ORTHO05D006683 5.5e-52 208.8 121 80.2
Duzib170G1082 Durio zibethinus HOM05D000070 ORTHO05D006683 9.4e-52 208.0 121 81.0
Nitab4.5_0000246g0030 Nicotiana tabacum HOM05D000070 ORTHO05D006683 1.6e-51 207.2 121 81.8
Nitab4.5_0002019g0010 Nicotiana tabacum HOM05D000070 ORTHO05D006683 2.1e-51 206.8 120 81.7
Ciclev10007229m.g Citrus clementina HOM05D000070 ORTHO05D006683 2.7e-51 206.5 121 78.5
Gohir.D08G032300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 3.6e-51 206.1 121 81.0
Gorai.004G029700 Gossypium raimondii HOM05D000070 ORTHO05D006683 3.6e-51 206.1 121 81.0
Prupe.4G173800 Prunus persica HOM05D000070 ORTHO05D006683 6.1e-51 205.3 121 79.3
Sopen07g030990 Solanum pennellii HOM05D000070 ORTHO05D006683 7.9e-51 204.9 121 80.2
PGSC0003DMG400012401 Solanum tuberosum HOM05D000070 ORTHO05D006683 7.9e-51 204.9 121 80.2
Hma1.2p1_0416F.1_g148460 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 1.0e-50 204.5 121 78.5
Hma1.2p1_0416F.1_g148470 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 1.0e-50 204.5 121 78.5
GSVIVG01014274001 Vitis vinifera HOM05D000070 ORTHO05D006683 1.0e-50 204.5 121 80.2
TAR626G0798 Trochodendron aralioides HOM05D000070 ORTHO05D006683 1.4e-50 204.1 121 79.3
Lj1A837T49 Lonicera japonica HOM05D000070 ORTHO05D006683 1.8e-50 203.8 121 79.3
Atru.chr2.2387 Acer truncatum HOM05D000070 ORTHO05D006683 2.3e-50 203.4 121 79.3
CAN.G162.29 Capsicum annuum HOM05D000070 ORTHO05D006683 3.0e-50 203.0 121 79.3
ClCG05G009240 Citrullus lanatus HOM05D000070 ORTHO05D006683 3.0e-50 203.0 121 76.9
MELO3C019399.2 Cucumis melo HOM05D000070 ORTHO05D006683 3.0e-50 203.0 121 76.9
CsaV3_3G019540 Cucumis sativus L. HOM05D000070 ORTHO05D006683 3.0e-50 203.0 121 76.9
QL08p023642 Quercus lobata HOM05D000070 ORTHO05D006683 3.0e-50 203.0 121 80.2
Thecc.07G098900 Theobroma cacao HOM05D000070 ORTHO05D006683 3.9e-50 202.6 121 78.5
CANSAT35G1857 Cannabis sativa HOM05D000070 ORTHO05D006683 6.7e-50 201.8 121 80.2
ECA240G2408 Erigeron canadensis HOM05D000070 ORTHO05D006683 6.7e-50 201.8 121 78.5
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 8.8e-50 201.4 121 80.2
Nn1g06393 Nelumbo nucifera HOM05D000070 ORTHO05D006683 8.8e-50 201.4 121 76.9
Peaxi162Scf00069g01842 Petunia axillaris HOM05D000070 ORTHO05D006683 8.8e-50 201.4 121 78.5
Solyc07g062770.2 Solanum lycopersicum HOM05D000070 ORTHO05D006683 8.8e-50 201.4 121 78.5
MD11G1256000 Malus domestica HOM05D000070 ORTHO05D006683 4.3e-49 199.1 121 78.5
TWI38G2035 Tripterygium wilfordii HOM05D000070 ORTHO05D006683 5.7e-49 198.7 121 76.0
BraA03t13065Z Brassica rapa HOM05D000070 ORTHO05D006683 7.4e-49 198.4 147 68.7
HanXRQChr13g0391161 Helianthus annuus HOM05D000070 ORTHO05D006683 1.7e-48 197.2 121 77.7
Sabra11G0127000 Salix brachista HOM05D000070 ORTHO05D006683 1.7e-48 197.2 121 76.0
MSTRG.14209 Avicennia marina HOM05D000070 ORTHO05D006683 2.8e-48 196.4 121 76.9
arahy.Tifrunner.gnm1.ann1.48N9B9 Arachis hypogaea HOM05D000070 ORTHO05D006683 8.2e-48 194.9 121 74.4
Sed0024008 Sechium edule HOM05D000070 ORTHO05D006683 8.2e-48 194.9 120 75.0
Lj3g0013945 Lotus japonicus HOM05D000070 ORTHO05D006683 1.1e-47 194.5 122 75.4
A03p39160 Brassica napus HOM05D000070 ORTHO05D006683 1.4e-47 194.1 120 76.7
DCAR_013128 Daucus carota HOM05D000070 ORTHO05D006683 1.8e-47 193.7 121 76.9
THA.LOC104810458 Tarenaya hassleriana HOM05D000070 ORTHO05D006683 5.3e-47 192.2 121 76.0
Aa31LG8G2340 Aethionema arabicum HOM05D000070 ORTHO05D006683 1.2e-46 191.0 120 74.2
FvH4_3g19240 Fragaria vesca HOM05D000070 ORTHO05D006683 1.5e-46 190.7 121 76.0
FAN11G2237 Fragaria x ananassa HOM05D000070 ORTHO05D006683 1.5e-46 190.7 121 76.0
FAN21G0502 Fragaria x ananassa HOM05D000070 ORTHO05D006683 1.5e-46 190.7 121 76.0
FAN25G1528 Fragaria x ananassa HOM05D000070 ORTHO05D006683 1.5e-46 190.7 121 76.0
Potri.011G141400 Populus trichocarpa HOM05D000070 ORTHO05D006683 2.0e-46 190.3 121 75.2
BcaC01g03897 Brassica carinata HOM05D000070 ORTHO05D006683 4.5e-46 189.1 120 75.0
C03p47510 Brassica napus HOM05D000070 ORTHO05D006683 4.5e-46 189.1 120 75.0
BolC3t17015H Brassica oleracea HOM05D000070 ORTHO05D006683 4.5e-46 189.1 120 75.0
SalBow7G0119 Salvia bowleyana HOM05D000070 ORTHO05D006683 4.5e-46 189.1 121 72.7
SGA_v2.0_scaffold70G23693 Striga asiatica HOM05D000070 ORTHO05D006683 4.5e-46 189.1 121 74.4
RcHm_v2.0_Chr5g0032311 Rosa chinensis HOM05D000070 ORTHO05D006683 7.7e-46 188.3 121 75.2
TPR.G7945 Trifolium pratense HOM05D000070 ORTHO05D006683 7.7e-46 188.3 122 73.8
AL3G27480 Arabidopsis lyrata HOM05D000070 ORTHO05D006683 1.7e-45 187.2 120 73.3
AT3G15120 Arabidopsis thaliana HOM05D000070 ORTHO05D006683 1.7e-45 187.2 120 73.3
Thhalv10019880m.g Eutrema salsugineum HOM05D000070 ORTHO05D006683 2.2e-45 186.8 120 73.3
FAN16G3451 Fragaria x ananassa HOM05D000070 ORTHO05D006683 2.2e-45 186.8 121 74.4
Sc07g0002540 Simmondsia chinensis HOM05D000070 ORTHO05D006683 2.2e-45 186.8 121 71.9
EL10Ac4g08256 Beta vulgaris HOM05D000070 ORTHO05D006683 2.9e-45 186.4 121 73.6
Carub.0003s1477 Capsella rubella HOM05D000070 ORTHO05D006683 2.9e-45 186.4 120 73.3
Cc05_g11650 Coffea canephora HOM05D000070 ORTHO05D006683 3.8e-45 186.0 121 71.9
Phvul.005G069600 Phaseolus vulgaris HOM05D000070 ORTHO05D006683 3.8e-45 186.0 121 71.9
Sp3g13330 Schrenkiella parvula HOM05D000070 ORTHO05D006683 5.0e-45 185.7 121 71.1
Aqoxy1G02305 Aquilegia oxysepala HOM05D000070 ORTHO05D006683 6.5e-45 185.3 121 70.2
Glyma.13G273300 Glycine max HOM05D000070 ORTHO05D006683 6.5e-45 185.3 121 71.1
Migut.H01962 Erythranthe guttata HOM05D000070 ORTHO05D006683 8.5e-45 184.9 121 71.9
Zm00001eb157300 Zea mays HOM05D000070 ORTHO05D006683 8.5e-45 184.9 121 73.6
PGR083G0044 Punica granatum HOM05D000070 ORTHO05D006683 1.4e-44 184.1 121 71.9
SHI21480 Sapria himalayana HOM05D000070 ORTHO05D006683 1.4e-44 184.1 121 71.1
AUR62019488 Chenopodium quinoa HOM05D000070 ORTHO05D006683 3.2e-44 183.0 121 71.9
Glyma.12G227000 Glycine max HOM05D000070 ORTHO05D006683 3.2e-44 183.0 121 71.9
Ca_03533_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006683 4.2e-44 182.6 121 71.1
PSO541G4369 Papaver somniferum HOM05D000070 ORTHO05D006683 4.2e-44 182.6 121 73.6
AUR62036148 Chenopodium quinoa HOM05D000070 ORTHO05D006683 5.5e-44 182.2 121 71.9
Ah.06g184760 Amaranthus hybridus HOM05D000070 ORTHO05D006683 7.2e-44 181.8 121 72.7
ATR0602G265 Amborella trichopoda HOM05D000070 ORTHO05D006683 7.2e-44 181.8 121 69.4
Lsat_1_v5_gn_9_98220 Lactuca sativa HOM05D000070 ORTHO05D006683 7.2e-44 181.8 123 74.0
Lalb_Chr25g0286211 Lupinus albus HOM05D000070 ORTHO05D006683 9.4e-44 181.4 120 73.3
Psat5g241520 Pisum sativum HOM05D000070 ORTHO05D006683 1.2e-43 181.0 121 71.9
VMungo1080G0328 Vigna mungo HOM05D000070 ORTHO05D006683 1.6e-43 180.6 121 71.1
Lalb_Chr20g0109491 Lupinus albus HOM05D000070 ORTHO05D006683 2.1e-43 180.3 120 75.0
CARHR090100 Cardamine hirsuta HOM05D000070 ORTHO05D006683 2.7e-43 179.9 120 70.8
Medtr2g078630 Medicago truncatula HOM05D000070 ORTHO05D006683 3.6e-43 179.5 121 71.1
HPP92_024566 Vanilla planifolia HOM05D000070 ORTHO05D006683 9.7e-41 171.4 121 65.3
CDE10G0809 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 6.3e-40 168.7 121 65.3
CDE10G0445 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 2.7e-35 153.3 112 65.2
SEGI_00098 Sequoiadendron giganteum HOM05D000070 ORTHO05D006683 2.3e-34 150.2 120 61.7
Eucgr.F01177 Eucalyptus grandis HOM05D000070 ORTHO05D006683 2.9e-29 133.3 86 72.1
Gohir.A08G021416 Gossypium hirsutum HOM05D000070 ORTHO05D006683 6.5e-29 132.1 77 83.1
TAR624G0378 Trochodendron aralioides HOM05D000070 ORTHO05D006683 2.2e-21 107.1 59 79.7
AagrBONN_evm.TU.Sc2ySwM_368.1632 Anthoceros agrestis HOM05D000070 ORTHO05D006683 5.0e-21 105.9 137 43.1
Mapoly0043s0039 Marchantia polymorpha HOM05D036583 ORTHO05D006683 1.9e-20 104.0 140 39.3
Pp3c8_5410 Physcomitrium patens HOM05D000070 ORTHO05D006683 2.5e-20 103.6 136 41.2
unitig_899.g15571 Utricularia gibba HOM05D000070 ORTHO05D006683 4.9e-16 89.4 62 72.6
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 6.3e-16 89.0 45 95.6
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 8.6e-13 78.6 52 76.9
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.9e-12 77.4 54 70.4
CSS0000399 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 2.5e-12 77.0 43 90.7
CSS0033083 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 2.5e-12 77.0 43 90.7
CSS0010451 Camellia sinensis var. sinensis HOM05D000736 ORTHO05D002593 3.3e-12 76.6 56 94.6
vmacro01780 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 3.6e-11 73.2 55 69.1
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 2.3e-10 70.5 52 65.4
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 2.3e-10 70.5 52 69.2
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 3.0e-10 70.1 53 66.0
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 3.0e-10 70.1 53 66.0
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 3.0e-10 70.1 52 65.4
ClCG04G000030 Citrullus lanatus HOM05D000070 ORTHO05D006683 4.0e-10 69.7 134 35.8
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 5.2e-10 69.3 52 67.3
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 5.2e-10 69.3 55 65.5
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 6.8e-10 68.9 52 67.3
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 6.8e-10 68.9 52 65.4
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 1.2e-09 68.2 52 65.4
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 2.0e-09 67.4 52 65.4
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 2.0e-09 67.4 52 63.5
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 3.4e-09 66.6 52 63.5
vmacro18627 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 4.4e-09 66.2 54 64.8
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 5.7e-09 65.9 52 61.5
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 9.8e-09 65.1 52 61.5
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 1.3e-08 64.7 52 61.5
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.3e-08 64.7 52 63.5
Dinv25525 Davidia involucrata HOM05D000736 ORTHO05D002593 1.7e-08 64.3 57 61.4
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.7e-08 64.3 54 63.0
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 2.2e-08 63.9 45 64.4
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 2.2e-08 63.9 81 49.4
Actinidia30248 Actinidia chinensis HOM05D000736 ORTHO05D002593 3.7e-08 63.2 58 56.9
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 4.9e-08 62.8 53 56.6
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 4.9e-08 62.8 53 56.6
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 4.9e-08 62.8 53 56.6
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 4.9e-08 62.8 54 61.1
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 4.9e-08 62.8 75 49.3
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 4.9e-08 62.8 52 63.5
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 6.4e-08 62.4 45 66.7
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 6.4e-08 62.4 45 64.4
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 6.4e-08 62.4 52 59.6
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 1.1e-07 61.6 54 59.3
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 1.1e-07 61.6 54 59.3
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 1.4e-07 61.2 73 46.6
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 1.8e-07 60.8 52 55.8
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 2.4e-07 60.5 52 55.8
GSVIVG01005672001 Vitis vinifera HOM05D002759 ORTHO05D003290 2.4e-07 60.5 82 48.8
TAR624G0583 Trochodendron aralioides HOM05D000070 ORTHO05D006683 4.1e-07 59.7 33 81.8
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 5.4e-07 59.3 52 59.6
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 7.0e-07 58.9 52 55.8
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 7.0e-07 58.9 54 57.4
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 9.2e-07 58.5 76 42.1
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 9.2e-07 58.5 46 63.0
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 1.2e-06 58.2 87 43.7
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 1.2e-06 58.2 52 53.8
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.6e-06 57.8 45 62.2
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.6e-06 57.8 45 62.2
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 1.6e-06 57.8 54 59.3
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 1.6e-06 57.8 52 59.6
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 2.0e-06 57.4 45 62.2
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 3.5e-06 56.6 52 55.8
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 4.6e-06 56.2 52 53.8
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 4.6e-06 56.2 53 52.8
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 5.9e-06 55.8 54 53.7
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.9e-06 55.8 52 55.8
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.9e-06 55.8 52 55.8
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 7.8e-06 55.5 52 55.8
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 7.8e-06 55.5 52 55.8
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 7.8e-06 55.5 52 57.7


User provided reference genes

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