Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 7.2e-165 583.9 319 100.0
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.2e-140 503.4 319 87.1
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 6.8e-139 497.7 319 85.6
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.7e-137 491.9 319 85.3
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 2.4e-136 489.2 319 85.3
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 9.2e-136 487.3 319 84.6
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 4.6e-135 485.0 319 82.4
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.3e-134 483.4 319 83.1
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 1.3e-134 483.4 318 84.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 6.6e-134 481.1 315 83.2
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 3.3e-133 478.8 320 84.7
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.6e-132 475.3 315 82.5
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.7e-132 474.9 319 80.9
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 4.7e-132 474.9 319 80.9
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 6.2e-132 474.6 319 82.8
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 5.2e-131 471.5 319 79.6
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 5.2e-131 471.5 319 80.6
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 3.4e-130 468.8 309 83.2
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 5.8e-130 468.0 319 81.5
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 7.6e-130 467.6 319 80.3
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 9.9e-130 467.2 319 80.9
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.7e-129 466.5 311 81.0
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 4.9e-129 464.9 319 79.9
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.4e-128 463.4 319 79.3
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.4e-128 463.4 317 79.5
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.9e-128 463.0 309 81.9
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 2.4e-128 462.6 319 79.6
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 3.5e-127 458.8 319 80.3
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.0e-126 457.2 318 80.5
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.7e-126 456.4 319 79.9
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.7e-126 456.4 319 79.0
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.7e-126 456.4 319 79.0
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 3.9e-126 455.3 348 75.0
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 6.6e-126 454.5 317 78.2
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 8.6e-126 454.1 319 76.8
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.5e-125 453.4 319 78.4
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.5e-125 453.4 319 79.9
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.9e-125 453.0 319 78.4
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.5e-125 452.6 319 78.4
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.5e-125 452.6 319 79.3
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 3.3e-125 452.2 319 78.1
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 3.3e-125 452.2 319 79.3
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.3e-125 451.8 315 78.1
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 5.6e-125 451.4 317 77.3
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 7.3e-125 451.1 319 80.6
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 8.1e-124 447.6 319 75.5
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.4e-123 446.8 317 77.0
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 4.0e-123 445.3 316 78.2
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 5.2e-123 444.9 309 79.9
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 7.6e-122 441.0 319 75.2
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.9e-121 439.1 319 76.5
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 8.4e-121 437.6 319 76.5
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.1e-120 437.2 317 75.4
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 3.2e-120 435.6 319 74.6
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 5.4e-120 434.9 319 75.5
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.6e-119 433.3 317 75.4
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.1e-119 433.0 319 75.2
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 7.8e-119 431.0 317 77.0
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.0e-118 430.6 315 77.5
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.0e-118 430.6 320 74.7
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 8.7e-118 427.6 319 74.9
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 2.1e-116 422.9 320 73.4
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 7.6e-114 414.5 317 71.9
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.7e-113 413.3 319 72.4
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 4.2e-112 408.7 319 71.5
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 5.4e-112 408.3 368 65.8
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.2e-111 407.1 319 73.4
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 2.7e-111 406.0 319 73.7
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 3.5e-111 405.6 319 72.7
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 6.0e-111 404.8 319 71.5
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.9e-110 402.1 317 72.9
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 3.9e-110 402.1 263 81.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 6.6e-110 401.4 319 71.5
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.5e-109 400.2 320 71.6
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 4.8e-108 395.2 317 70.0
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.4e-107 393.7 315 71.1
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.5e-106 390.2 319 71.5
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.5e-106 390.2 317 70.0
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 7.6e-106 387.9 319 69.6
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 9.9e-106 387.5 319 71.5
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 2.2e-105 386.3 307 70.4
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.9e-104 383.3 315 68.6
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.0e-102 377.5 319 67.4
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-102 377.1 319 69.3
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.8e-102 376.7 319 68.3
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 8.7e-102 374.4 331 66.8
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 3.7e-100 369.0 320 67.2
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.1e-99 367.5 319 69.0
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 6.9e-99 364.8 261 73.9
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 7.6e-98 361.3 316 65.2
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.1e-96 357.5 319 63.6
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 4.2e-96 355.5 261 73.6
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.1e-96 354.8 261 73.6
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.1e-95 353.2 315 64.1
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 2.7e-95 352.8 317 63.1
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.3e-94 349.7 319 65.2
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.3e-94 349.7 319 65.2
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 3.9e-94 349.0 319 64.3
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.1e-93 347.4 312 65.4
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.3e-93 345.9 317 63.4
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 4.3e-93 345.5 317 62.8
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 9.6e-93 344.4 317 63.4
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.6e-92 343.6 319 65.5
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.1e-91 339.3 312 63.8
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 6.9e-91 338.2 316 62.7
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 7.6e-90 334.7 321 60.4
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 4.2e-88 328.9 319 61.4
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.2e-87 327.4 305 63.6
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.7e-87 326.2 320 60.6
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 4.6e-87 325.5 315 61.0
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.3e-86 323.2 315 61.9
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.0e-86 322.8 315 60.3
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.1e-85 320.9 316 59.5
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.8e-84 316.2 314 60.5
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.1e-83 314.3 316 59.5
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 3.1e-83 312.8 316 60.1
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 5.3e-83 312.0 316 60.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 5.3e-83 312.0 316 60.1
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 2.6e-82 309.7 316 59.5
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 5.9e-82 308.5 317 59.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 8.5e-81 304.7 262 66.0
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-80 304.3 316 57.9
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 8.8e-78 294.7 311 54.0
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 3.3e-77 292.7 320 55.6
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 9.7e-77 291.2 316 57.3
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.7e-76 290.4 314 54.5
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.2e-76 288.1 314 56.4
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.2e-76 288.1 285 61.4
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.4e-75 286.6 285 61.4
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 4.1e-75 285.8 289 61.2
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.9e-74 282.0 310 55.8
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 5.0e-73 278.9 314 55.1
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 4.2e-72 275.8 285 61.8
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 9.4e-72 274.6 319 53.6
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.1e-71 273.5 319 52.0
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 7.9e-71 271.6 309 54.7
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 7.9e-71 271.6 310 55.2
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.0e-70 271.2 308 55.2
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 8.8e-70 268.1 303 58.1
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.0e-69 266.9 284 59.5
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 2.6e-69 266.5 207 72.9
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 7.4e-69 265.0 296 57.4
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 2.4e-67 260.0 319 51.7
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 5.3e-67 258.8 309 53.4
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 5.9e-66 255.4 235 63.4
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.2e-65 253.4 289 54.0
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.9e-64 250.4 320 50.0
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 4.4e-61 239.2 320 50.9
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 3.1e-59 233.0 318 49.7
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.3e-57 227.6 260 53.8
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 3.6e-55 219.5 317 45.7
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 4.7e-55 219.2 138 90.6
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 2.6e-53 213.4 316 44.0
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.2e-52 210.3 324 41.7
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 8.5e-49 198.4 256 50.0
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 8.5e-49 198.4 177 58.8
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 8.5e-49 198.4 294 44.2
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.7e-47 193.4 253 49.4
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.5e-45 187.6 319 38.6
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.4e-43 180.3 176 60.8
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 3.5e-42 176.4 152 68.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.6e-39 166.4 158 64.6
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 6.1e-39 165.6 296 42.9
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 9.5e-32 141.7 281 39.1
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.2e-29 134.8 321 37.1
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 3.9e-25 119.8 289 37.4
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 3.9e-25 119.8 145 53.8
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 4.9e-20 102.8 196 38.8
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 4.9e-20 102.8 196 38.8
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 3.0e-17 93.6 91 62.6
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 6.2e-15 85.9 55 85.5
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.2e-13 81.6 54 81.5
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 3.4e-13 80.1 111 50.5
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.7e-12 76.6 289 31.1
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 2.4e-06 57.4 95 46.3


User provided reference genes

Program Settings