Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 1.1e-180 636.7 320 100.0
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 3.2e-156 555.4 311 90.0
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 8.2e-152 540.8 304 89.1
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 1.3e-149 533.5 306 87.9
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 1.6e-144 516.5 319 80.3
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.5e-142 510.0 309 81.9
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 2.6e-142 509.2 310 81.6
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 3.8e-141 505.4 318 79.6
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 1.9e-140 503.1 308 81.8
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.9e-140 503.1 316 78.2
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 9.4e-140 500.7 312 80.8
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 7.9e-139 497.7 311 78.8
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 2.3e-138 496.1 311 78.5
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 1.5e-137 493.4 306 80.4
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 2.0e-137 493.0 308 78.9
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 4.3e-137 491.9 304 81.2
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 9.7e-137 490.7 309 79.6
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 9.7e-137 490.7 322 76.4
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 2.8e-136 489.2 309 79.6
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 6.3e-136 488.0 304 79.6
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 1.1e-135 487.3 314 77.4
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 6.9e-135 484.6 320 75.0
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 2.0e-134 483.0 315 79.0
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 4.5e-134 481.9 308 77.6
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 4.5e-134 481.9 309 77.7
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 5.9e-134 481.5 305 79.3
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 1.3e-133 480.3 312 76.3
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 2.2e-133 479.6 316 75.9
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 3.8e-133 478.8 314 75.5
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 6.5e-133 478.0 314 74.8
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 1.1e-132 477.2 313 75.1
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 1.9e-132 476.5 309 77.3
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 2.1e-131 473.0 306 74.8
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 6.1e-131 471.5 306 76.5
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 7.9e-131 471.1 309 74.8
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 7.9e-131 471.1 306 76.5
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 1.4e-130 470.3 306 74.2
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 3.9e-130 468.8 308 76.0
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 8.8e-130 467.6 309 76.1
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 8.8e-130 467.6 306 73.9
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 8.8e-130 467.6 294 77.6
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 1.1e-129 467.2 309 75.1
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 1.1e-129 467.2 307 76.5
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 1.1e-129 467.2 308 75.6
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 1.1e-129 467.2 306 78.1
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 9.7e-129 464.2 311 76.5
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 9.7e-129 464.2 309 75.7
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 1.3e-128 463.8 307 76.5
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 1.1e-127 460.7 310 75.8
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 1.8e-127 459.9 306 75.8
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 2.4e-127 459.5 301 77.7
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 3.1e-127 459.1 310 75.8
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 5.3e-127 458.4 311 74.3
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 5.3e-127 458.4 305 75.4
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 5.3e-127 458.4 252 88.1
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 5.3e-127 458.4 307 74.9
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 7.0e-127 458.0 304 75.7
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 9.1e-127 457.6 342 69.6
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 2.0e-126 456.4 304 74.7
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 2.0e-126 456.4 311 74.0
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 2.0e-126 456.4 311 74.0
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 2.6e-126 456.1 306 75.2
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 3.5e-126 455.7 305 77.0
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 4.5e-126 455.3 314 72.9
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 4.5e-126 455.3 307 75.9
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 2.2e-125 453.0 304 74.3
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 5.0e-125 451.8 306 73.5
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 6.5e-125 451.4 304 74.0
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 8.5e-125 451.1 304 73.7
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 8.5e-125 451.1 313 72.5
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 1.1e-124 450.7 307 73.9
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 9.4e-124 447.6 304 73.4
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 1.2e-123 447.2 308 75.3
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 4.7e-123 445.3 308 75.0
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 6.1e-123 444.9 306 72.9
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 1.8e-122 443.4 310 73.5
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 5.2e-122 441.8 300 73.0
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 5.2e-122 441.8 287 76.0
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 6.7e-122 441.4 306 72.2
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 1.1e-121 440.7 304 74.0
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 1.7e-120 436.8 267 83.1
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 1.7e-120 436.8 284 73.2
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 2.2e-120 436.4 313 70.0
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 4.8e-120 435.3 308 73.1
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 7.0e-119 431.4 309 69.6
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 5.9e-118 428.3 306 70.3
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 1.3e-117 427.2 310 69.0
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 2.5e-116 422.9 307 67.8
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 2.2e-112 409.8 307 70.4
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 5.4e-111 405.2 287 72.5
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 7.0e-111 404.8 314 67.2
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 1.3e-109 400.6 291 73.2
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 4.4e-105 385.6 238 80.7
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 4.1e-103 379.0 245 76.3
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 8.0e-99 364.8 265 67.9
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 1.3e-96 357.5 300 60.0
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.3e-93 347.4 292 67.1
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 5.0e-93 345.5 259 66.0
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 1.1e-87 327.8 305 57.7
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 9.2e-87 324.7 304 56.2
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 1.2e-86 324.3 307 59.0
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 7.8e-86 321.6 306 52.6
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 7.3e-84 315.1 316 56.0
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 1.8e-82 310.5 313 59.1
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 7.8e-78 295.0 269 60.6
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 6.4e-72 275.4 282 52.8
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 2.4e-71 273.5 325 46.5
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 9.2e-71 271.6 209 67.5
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 2.6e-65 253.4 173 74.0
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 1.4e-63 247.7 174 73.0
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 7.1e-55 218.8 146 77.4
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 4.3e-52 209.5 370 37.6
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 5.8e-49 199.1 196 55.6
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 1.2e-46 191.4 124 80.6
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 1.6e-46 191.0 188 58.0
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 1.6e-46 191.0 350 35.1
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 3.4e-41 173.3 183 54.6
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 2.1e-30 137.5 72 91.7
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 6.5e-16 89.4 63 71.4
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 9.4e-15 85.5 79 51.9
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 2.3e-13 80.9 45 93.3
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 8.2e-11 72.4 45 68.9
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 1.4e-10 71.6 76 51.3
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 4.1e-10 70.1 52 63.5
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 4.1e-10 70.1 103 41.7
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 2.0e-09 67.8 41 80.5
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.7e-08 64.7 38 89.5
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.5e-07 61.6 47 61.7


User provided reference genes

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