Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008371 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D109564 2.9e-28 127.9 65 100.0
Rhsim12G0175800 Rhododendron simsii HOM05D000276 ORTHO05D003855 2.2e-12 75.1 38 97.4
DCAR_013727 Daucus carota HOM05D000276 ORTHO05D003855 4.2e-11 70.9 38 89.5
Lj5A344G22 Lonicera japonica HOM05D000276 ORTHO05D003855 4.2e-11 70.9 38 89.5
CAN.G782.3 Capsicum annuum HOM05D000276 ORTHO05D003855 1.0e-09 66.2 38 81.6
Actinidia36817 Actinidia chinensis HOM05D000276 ORTHO05D003855 1.5e-08 62.4 60 61.7
CSS0029046 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D003855 1.5e-08 62.4 60 61.7
CSS0035611 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D003855 1.5e-08 62.4 60 61.7
Lj1A1145T21 Lonicera japonica HOM05D000276 ORTHO05D003855 2.8e-07 58.2 60 56.7
Migut.M01532 Erythranthe guttata HOM05D000276 ORTHO05D003855 3.7e-07 57.8 60 56.7
unitig_578.g16332 Utricularia gibba HOM05D000276 ORTHO05D003855 3.7e-07 57.8 60 56.7
unitig_8.g4751 Utricularia gibba HOM05D000276 ORTHO05D003855 3.7e-07 57.8 60 56.7
MSTRG.13078 Avicennia marina HOM05D000276 ORTHO05D003855 4.8e-07 57.4 60 56.7
MSTRG.14567 Avicennia marina HOM05D000276 ORTHO05D003855 6.3e-07 57.0 60 55.0
COL.COLO4_30995 Corchorus olitorius HOM05D000276 ORTHO05D003855 6.3e-07 57.0 60 56.7
Dinv19593 Davidia involucrata HOM05D000276 ORTHO05D003855 6.3e-07 57.0 60 56.7
Duzib235G1056 Durio zibethinus HOM05D000276 ORTHO05D003855 6.3e-07 57.0 60 56.7
Oeu027721.1 Olea europaea HOM05D001395 ORTHO05D003855 6.3e-07 57.0 62 54.8
Oeu043725.1 Olea europaea HOM05D000276 ORTHO05D003855 6.3e-07 57.0 62 54.8
Prupe.4G112500 Prunus persica HOM05D000276 ORTHO05D003855 6.3e-07 57.0 60 56.7
Ah.10g035160 Amaranthus hybridus HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Ah.16g105330 Amaranthus hybridus HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Aqoxy3G04299 Aquilegia oxysepala HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
EL10Ac9g22468 Beta vulgaris HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
CANSAT78G1531 Cannabis sativa HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Cfa000708 Carpinus fangiana HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
CiPaw.09G076900 Carya illinoinensis HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
ClCG01G009520 Citrullus lanatus HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
MELO3C021745.2 Cucumis melo HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Dinv42484 Davidia involucrata HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Glyma.08G167600 Glycine max HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Gohir.A05G145700 Gossypium hirsutum HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Gohir.A10G044600 Gossypium hirsutum HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Gohir.D05G148100 Gossypium hirsutum HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Gohir.D10G045800 Gossypium hirsutum HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Gorai.009G152300 Gossypium raimondii HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Manes.14G010700 Manihot esculenta HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Nn4g24843 Nelumbo nucifera HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Phvul.005G059300 Phaseolus vulgaris HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Potri.012G123550 Populus trichocarpa HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Potri.015G122400 Populus trichocarpa HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Sed0005548 Sechium edule HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Thecc.06G143200 Theobroma cacao HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
TWI38G2183 Tripterygium wilfordii HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
TWI63G1717 Tripterygium wilfordii HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
VMungo0464G0273 Vigna mungo HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
GSVIVG01012066001 Vitis vinifera HOM05D000276 ORTHO05D003855 8.2e-07 56.6 60 56.7
Aqoxy2G04019 Aquilegia oxysepala HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 55.0
arahy.Tifrunner.gnm1.ann1.A3R4VN Arachis hypogaea HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
arahy.Tifrunner.gnm1.ann1.J6931G Arachis hypogaea HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
arahy.Tifrunner.gnm1.ann1.N85E68 Arachis hypogaea HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
arahy.Tifrunner.gnm1.ann1.X4HZ2T Arachis hypogaea HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
CDE07G0648 Ceratophyllum demersum HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
Eucgr.F04120 Eucalyptus grandis HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
Lj1g0005035 Lotus japonicus HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
Lalb_Chr01g0015471 Lupinus albus HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
Lalb_Chr25g0284731 Lupinus albus HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
Medtr0167s0060 Medicago truncatula HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
Psat1g013600 Pisum sativum HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
TPR.G33827 Trifolium pratense HOM05D000276 ORTHO05D003855 1.1e-06 56.2 60 56.7
Aqoxy2G01703 Aquilegia oxysepala HOM05D000276 ORTHO05D003855 1.4e-06 55.8 60 55.0
CiPaw.10G064400 Carya illinoinensis HOM05D000276 ORTHO05D003855 1.4e-06 55.8 60 55.0
Mapoly0004s0033 Marchantia polymorpha HOM05D000276 ORTHO05D003855 1.4e-06 55.8 60 55.0
Os02g0634900 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D003855 1.4e-06 55.8 60 53.3
Peaxi162Scf00469g00315 Petunia axillaris HOM05D000276 ORTHO05D003855 1.4e-06 55.8 60 53.3
Pp3c11_10390 Physcomitrium patens HOM05D000276 ORTHO05D003855 1.4e-06 55.8 60 53.3
Glyma.01G105500 Glycine max HOM05D000276 ORTHO05D003855 1.8e-06 55.5 60 55.0
Glyma.03G073300 Glycine max HOM05D000276 ORTHO05D003855 1.8e-06 55.5 60 55.0
Glyma.15G260000 Glycine max HOM05D000276 ORTHO05D003855 1.8e-06 55.5 60 55.0
MD05G1224600 Malus domestica HOM05D000276 ORTHO05D003855 1.8e-06 55.5 60 55.0
MD05G1251300 Malus domestica HOM05D000276 ORTHO05D003855 1.8e-06 55.5 60 55.0
MD10G1206300 Malus domestica HOM05D000276 ORTHO05D003855 1.8e-06 55.5 60 55.0
MD10G1231800 Malus domestica HOM05D000276 ORTHO05D003855 1.8e-06 55.5 60 55.0
Peaxi162Scf00241g00079 Petunia axillaris HOM05D000276 ORTHO05D003855 1.8e-06 55.5 62 51.6
Prupe.4G136000 Prunus persica HOM05D000276 ORTHO05D003855 1.8e-06 55.5 60 55.0
Zm00001eb185540 Zea mays HOM05D000276 ORTHO05D003855 1.8e-06 55.5 60 53.3
QL04p081873 Quercus lobata HOM05D000276 ORTHO05D003855 2.4e-06 55.1 59 54.2
Sabra15G0138500 Salix brachista HOM05D000276 ORTHO05D003855 2.4e-06 55.1 64 53.1
SGA_v2.0_scaffold239G44025 Striga asiatica HOM05D000276 ORTHO05D003855 2.4e-06 55.1 60 53.3
SGA_v2.0_scaffold31G12584 Striga asiatica HOM05D000276 ORTHO05D003855 2.4e-06 55.1 59 54.2
Aa31LG4G1800 Aethionema arabicum HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
Aa31LG7G1010 Aethionema arabicum HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
Ah.11g040490 Amaranthus hybridus HOM05D000276 ORTHO05D003855 3.1e-06 54.7 69 46.4
AL1G28620 Arabidopsis lyrata HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
AL2G39680 Arabidopsis lyrata HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
AT1G16470 Arabidopsis thaliana HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
AT1G79210 Arabidopsis thaliana HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BcaB02g07205 Brassica carinata HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BcaB02g08674 Brassica carinata HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BcaB05g25179 Brassica carinata HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BcaC03g15875 Brassica carinata HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BcaC08g45369 Brassica carinata HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BcaC08g47486 Brassica carinata HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
A02p22670 Brassica napus HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
A07p27240 Brassica napus HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
A07p44330 Brassica napus HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
C06p30010 Brassica napus HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
C06p53100 Brassica napus HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BolC2t09642H Brassica oleracea HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BolC6t38161H Brassica oleracea HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BolC6t40327H Brassica oleracea HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BraA02t07268Z Brassica rapa HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BraA07t30368Z Brassica rapa HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
BraA07t31941Z Brassica rapa HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
Carub.0001s1621 Capsella rubella HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
Carub.0002s2608 Capsella rubella HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
CARHR016940 Cardamine hirsuta HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
CDE04G0605 Ceratophyllum demersum HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 55.0
Thhalv10008648m.g Eutrema salsugineum HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
Nitab4.5_0001095g0050 Nicotiana tabacum HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
Nitab4.5_0009892g0010 Nicotiana tabacum HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
PGR102G3129 Punica granatum HOM05D000276 ORTHO05D003855 3.1e-06 54.7 61 54.1
Sp1g14620 Schrenkiella parvula HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
Sp5g34260 Schrenkiella parvula HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
Hund12476 Selenicereus undatus HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 55.0
Hund26663 Selenicereus undatus HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 55.0
Sc24g0002720 Simmondsia chinensis HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 55.0
THA.LOC104808130 Tarenaya hassleriana HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
THA.LOC104812363 Tarenaya hassleriana HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 53.3
HPP92_021535 Vanilla planifolia HOM05D000276 ORTHO05D003855 3.1e-06 54.7 61 52.5
Zm00001eb087600 Zea mays HOM05D000276 ORTHO05D003855 3.1e-06 54.7 60 51.7
AagrBONN_evm.TU.Sc2ySwM_117.328 Anthoceros agrestis HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 53.3
CAN.G1736.4 Capsicum annuum HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
CBR_g50356 Chara braunii HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 53.3
Migut.H01673 Erythranthe guttata HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 53.3
Nitab4.5_0000822g0090 Nicotiana tabacum HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
Nitab4.5_0009223g0010 Nicotiana tabacum HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
Os03g0387100 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
Pp3c7_18410 Physcomitrium patens HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
Solyc07g055080.3 Solanum lycopersicum HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
Sopen07g027130 Solanum pennellii HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
PGSC0003DMG400020441 Solanum tuberosum HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
Zm00001eb248210 Zea mays HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
Zm00001eb248220 Zea mays HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
Zm00001eb248230 Zea mays HOM05D000276 ORTHO05D003855 4.1e-06 54.3 60 51.7
Lj3g0027077 Lotus japonicus HOM05D000276 ORTHO05D003855 5.3e-06 53.9 60 53.3
SEGI_04968 Sequoiadendron giganteum HOM05D000276 ORTHO05D003855 5.3e-06 53.9 60 53.3
Hma1.2p1_1208F.1_g267120 Hydrangea macrophylla HOM05D000276 ORTHO05D003855 6.9e-06 53.5 60 53.3
Manes.06G175300 Manihot esculenta HOM05D000276 ORTHO05D003855 6.9e-06 53.5 60 55.0
SMO203G0023 Selaginella moellendorffii HOM05D000276 ORTHO05D003855 6.9e-06 53.5 60 53.3
SEGI_13363 Sequoiadendron giganteum HOM05D000276 ORTHO05D003855 6.9e-06 53.5 60 53.3
Solyc10g008010.4 Solanum lycopersicum HOM05D000276 ORTHO05D003855 6.9e-06 53.5 60 51.7
Sopen10g003880 Solanum pennellii HOM05D000276 ORTHO05D003855 6.9e-06 53.5 60 51.7
PGSC0003DMG400010543 Solanum tuberosum HOM05D000276 ORTHO05D003855 6.9e-06 53.5 60 51.7
HPP92_021539 Vanilla planifolia HOM05D000276 ORTHO05D003855 6.9e-06 53.5 60 53.3
HPP92_021548 Vanilla planifolia HOM05D000276 ORTHO05D003855 6.9e-06 53.5 60 53.3
ECA236G0294 Erigeron canadensis HOM05D000276 ORTHO05D003855 9.0e-06 53.1 60 51.7
HanXRQChr11g0335541 Helianthus annuus HOM05D000276 ORTHO05D003855 9.0e-06 53.1 60 51.7
Lsat_1_v5_gn_7_110320 Lactuca sativa HOM05D000276 ORTHO05D003855 9.0e-06 53.1 60 51.7
PSO017G4929 Papaver somniferum HOM05D000276 ORTHO05D003855 9.0e-06 53.1 60 51.7
PSO063G5488 Papaver somniferum HOM05D000276 ORTHO05D003855 9.0e-06 53.1 60 53.3
PSO478G2087 Papaver somniferum HOM05D000276 ORTHO05D003855 9.0e-06 53.1 60 51.7
PSO782G0714 Papaver somniferum HOM05D000276 ORTHO05D003855 9.0e-06 53.1 60 53.3
Sed0016966 Sechium edule HOM05D006866 ORTHO05D003855 9.0e-06 53.1 58 53.4


User provided reference genes

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