Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 0.0e+00 1159.4 639 100.0
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.0e-247 858.6 691 77.9
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.2e-222 776.9 688 65.0
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.6e-219 766.5 702 64.1
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 3.5e-211 738.8 626 66.1
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 8.4e-205 717.6 699 61.7
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.2e-204 715.3 694 61.0
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 3.5e-203 712.2 700 61.4
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 1.7e-202 709.9 702 60.8
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 6.2e-200 701.4 612 64.1
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 2.6e-198 696.0 601 65.1
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.1e-196 690.6 607 63.8
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.9e-196 689.9 699 57.5
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 4.2e-196 688.7 720 56.8
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 5.5e-196 688.3 720 56.7
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 2.1e-195 686.4 611 63.7
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 4.6e-195 685.3 610 61.8
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 4.6e-195 685.3 609 63.2
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.8e-194 683.3 706 58.1
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 5.1e-194 681.8 615 63.1
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.1e-193 680.6 617 63.4
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.5e-193 680.2 720 56.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 7.4e-193 677.9 636 60.1
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.6e-192 676.8 692 57.2
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 4.8e-192 675.2 651 61.0
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 8.1e-192 674.5 561 69.0
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.4e-191 673.7 698 56.7
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 2.0e-190 669.8 610 61.0
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 3.4e-190 669.1 612 61.6
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.0e-189 667.5 617 61.6
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 3.8e-189 665.6 603 60.7
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 3.8e-189 665.6 699 56.9
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 8.4e-189 664.5 697 57.2
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 1.4e-188 663.7 609 61.2
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.9e-188 663.3 600 62.0
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 1.9e-188 663.3 589 62.8
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 4.2e-188 662.1 596 61.4
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 1.3e-186 657.1 618 60.7
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.8e-186 656.8 610 60.5
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 2.3e-186 656.4 589 61.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 8.7e-186 654.4 700 57.4
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.5e-185 653.7 619 60.1
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 1.5e-185 653.7 648 58.3
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.9e-185 653.3 621 60.1
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 3.3e-185 652.5 635 58.3
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.7e-185 651.7 619 60.1
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 9.6e-185 651.0 689 56.6
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.3e-184 650.6 617 60.0
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 4.8e-184 648.7 694 55.3
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 4.8e-184 648.7 578 61.8
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.4e-183 646.4 626 59.4
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 2.0e-182 643.3 637 58.2
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 7.6e-182 641.3 543 66.9
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.7e-181 640.2 692 55.2
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.5e-180 636.3 619 58.2
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 5.5e-180 635.2 617 60.0
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.2e-179 634.0 617 59.8
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 1.0e-178 630.9 695 54.2
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.3e-178 630.6 572 60.3
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 1.3e-178 630.6 653 56.4
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 5.1e-178 628.6 585 60.3
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 8.7e-178 627.9 613 58.7
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.1e-177 627.5 617 57.9
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.3e-176 624.0 602 58.6
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 3.7e-176 622.5 569 60.3
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 6.3e-176 621.7 642 60.6
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 8.2e-176 621.3 605 58.5
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.8e-175 620.2 589 58.7
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.4e-175 619.8 608 59.4
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 4.1e-175 619.0 605 58.3
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 4.5e-174 615.5 600 57.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 5.9e-174 615.1 593 58.7
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 5.9e-174 615.1 593 58.7
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.3e-173 614.0 593 58.5
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 2.2e-173 613.2 614 57.5
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 2.2e-173 613.2 583 59.0
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 2.2e-173 613.2 612 58.8
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 6.5e-173 611.7 630 57.0
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 8.5e-173 611.3 590 58.6
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 1.4e-172 610.5 612 57.8
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 2.5e-172 609.8 620 56.6
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 5.5e-172 608.6 606 57.6
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 1.1e-169 600.9 607 57.0
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 3.7e-168 595.9 610 56.4
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.1e-167 594.3 614 56.5
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 2.6e-166 589.7 686 53.2
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 5.9e-166 588.6 544 59.2
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 3.8e-165 585.9 581 56.5
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.8e-165 585.9 609 56.7
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.9e-162 575.9 629 54.4
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 5.3e-159 565.5 606 55.6
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 3.8e-157 559.3 486 66.9
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.6e-155 553.9 624 53.2
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 8.0e-155 551.6 506 60.3
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 6.5e-149 531.9 603 52.4
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 6.8e-146 521.9 627 51.4
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 8.3e-144 515.0 644 51.4
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 4.1e-143 512.7 616 51.0
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 9.1e-143 511.5 699 49.5
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 2.7e-142 510.0 660 50.6
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 3.7e-136 489.6 644 46.6
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 4.7e-123 446.0 343 70.0
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 3.5e-118 429.9 516 50.2
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.1e-111 408.3 581 41.3
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 3.9e-109 399.8 631 42.2
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 1.8e-106 391.0 642 40.0
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 9.9e-105 385.2 321 66.0
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 1.7e-96 357.8 724 37.7
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 2.8e-91 340.5 334 57.8
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 5.3e-90 336.3 552 42.9
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 8.4e-88 328.9 251 69.7
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.4e-81 307.0 390 49.2
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.2e-78 298.5 514 39.9
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 8.7e-77 292.4 292 50.3
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 7.1e-71 272.7 327 47.4
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.6e-67 261.5 334 46.4
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 7.6e-65 252.7 288 52.1
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 6.7e-53 213.0 364 35.2
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 5.2e-45 186.8 177 61.6
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 8.8e-45 186.0 229 49.8
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 5.7e-44 183.3 419 29.4
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 2.2e-43 181.4 218 50.0
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 5.2e-37 160.2 198 48.5
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 1.3e-35 155.6 198 47.5
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.8e-35 153.7 100 77.0
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.8e-34 151.8 360 29.4
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 2.2e-32 144.8 98 68.4
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.0e-29 136.0 93 71.0
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 1.4e-29 135.6 247 35.6
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 3.0e-29 134.4 177 48.0
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 3.4e-28 131.0 181 44.8
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 6.3e-27 126.7 87 73.6
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 9.1e-26 122.9 151 47.7
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 4.5e-25 120.6 116 54.3
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 6.5e-24 116.7 205 46.3
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.4e-20 104.4 161 42.2
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 4.1e-18 97.4 115 47.0
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 1.5e-15 89.0 121 47.9
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 1.5e-15 89.0 83 61.4
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 2.1e-14 85.1 142 36.6
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 4.7e-14 84.0 142 35.9
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 4.7e-14 84.0 142 35.9
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 6.1e-14 83.6 142 35.9
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 6.1e-14 83.6 142 35.9
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 1.8e-13 82.0 142 35.2
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 3.0e-13 81.3 117 43.6
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 2.0e-12 78.6 97 53.6
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 2.4e-10 71.6 44 75.0
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 4.1e-10 70.9 45 68.9
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 5.4e-10 70.5 86 50.0
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 1.6e-09 68.9 194 31.4
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 3.5e-09 67.8 194 30.9
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 5.6e-07 60.5 72 50.0


User provided reference genes

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