Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 3.8e-42 174.5 92 100.0
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.2e-26 122.1 82 75.6
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 1.5e-25 119.4 82 72.0
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 1.2e-24 116.3 84 71.4
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 2.7e-24 115.2 82 68.3
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 1.4e-23 112.8 78 70.5
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 1.4e-23 112.8 78 70.5
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.8e-23 112.5 82 68.3
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 3.0e-23 111.7 81 67.9
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 6.8e-23 110.5 82 65.9
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 6.8e-23 110.5 80 68.8
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 8.8e-23 110.2 82 64.6
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 1.2e-22 109.8 82 68.3
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 2.0e-22 109.0 82 64.6
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 2.6e-22 108.6 79 65.8
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 2.6e-22 108.6 78 67.9
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 7.5e-22 107.1 78 66.7
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.3e-21 106.3 82 63.4
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.3e-21 106.3 79 68.4
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.2e-21 105.5 78 66.7
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 2.8e-21 105.1 78 65.4
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.7e-21 104.8 78 64.1
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 6.3e-21 104.0 77 64.9
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 6.3e-21 104.0 81 63.0
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.1e-20 103.2 77 67.5
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 1.8e-20 102.4 78 64.1
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.8e-20 102.4 82 62.2
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 1.8e-20 102.4 84 59.5
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.4e-20 102.1 82 61.0
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 2.4e-20 102.1 78 61.5
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 2.4e-20 102.1 82 61.0
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 2.4e-20 102.1 77 62.3
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 3.1e-20 101.7 82 61.0
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.1e-20 101.7 82 61.0
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 3.1e-20 101.7 78 65.4
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 4.1e-20 101.3 78 65.4
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 4.1e-20 101.3 78 65.4
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 4.1e-20 101.3 78 64.1
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 5.4e-20 100.9 82 62.2
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 5.4e-20 100.9 78 60.3
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 5.4e-20 100.9 77 62.3
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 7.0e-20 100.5 82 59.8
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 9.1e-20 100.1 78 60.3
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 9.1e-20 100.1 74 67.6
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.0e-19 99.0 50 90.0
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.0e-19 99.0 78 59.0
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.0e-19 99.0 50 92.0
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 2.0e-19 99.0 78 60.3
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 3.5e-19 98.2 82 57.3
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 5.9e-19 97.4 77 61.0
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 5.9e-19 97.4 56 82.1
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.3e-18 96.3 50 88.0
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.3e-18 96.3 50 88.0
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 1.3e-18 96.3 82 58.5
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 2.2e-18 95.5 82 58.5
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 2.9e-18 95.1 78 57.7
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 5.0e-18 94.4 78 56.4
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 8.5e-18 93.6 73 64.4
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 5.5e-17 90.9 76 57.9
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 3.0e-15 85.1 77 55.8
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.2e-14 83.2 75 54.7
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 2.8e-13 78.6 45 80.0
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 8.3e-13 77.0 76 47.4
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 8.3e-13 77.0 82 47.6
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 1.1e-12 76.6 82 47.6
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 1.4e-12 76.3 78 47.4
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.4e-12 76.3 78 47.4
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 1.4e-12 76.3 75 49.3
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 1.4e-12 76.3 75 50.7
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.8e-12 75.9 77 49.4
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.8e-12 75.9 81 46.9
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 2.4e-12 75.5 77 49.4
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 3.1e-12 75.1 78 48.7
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 4.1e-12 74.7 78 47.4
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 4.1e-12 74.7 77 49.4
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 5.4e-12 74.3 78 47.4
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 5.4e-12 74.3 75 49.3
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 5.4e-12 74.3 78 47.4
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 5.4e-12 74.3 75 49.3
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 5.4e-12 74.3 76 48.7
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 5.4e-12 74.3 77 48.1
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 5.4e-12 74.3 75 49.3
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 5.4e-12 74.3 76 48.7
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 5.4e-12 74.3 82 46.3
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 5.4e-12 74.3 82 46.3
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 5.4e-12 74.3 82 46.3
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 7.0e-12 73.9 78 47.4
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 7.0e-12 73.9 82 46.3
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 7.0e-12 73.9 75 50.7
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 9.2e-12 73.6 75 48.0
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 9.2e-12 73.6 78 46.2
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.2e-12 73.6 50 66.0
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 9.2e-12 73.6 75 49.3
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 9.2e-12 73.6 77 48.1
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 1.2e-11 73.2 76 48.7
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 1.2e-11 73.2 82 43.9
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.2e-11 73.2 78 46.2
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 1.2e-11 73.2 78 47.4
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 1.6e-11 72.8 77 46.8
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 1.6e-11 72.8 77 45.5
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 2.0e-11 72.4 77 46.8
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 2.0e-11 72.4 78 46.2
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 2.0e-11 72.4 75 48.0
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 2.0e-11 72.4 77 48.1
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.0e-11 72.4 77 45.5
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.0e-11 72.4 77 45.5
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 2.0e-11 72.4 75 48.0
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 2.0e-11 72.4 81 46.9
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 2.7e-11 72.0 75 48.0
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.7e-11 72.0 77 48.1
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 2.7e-11 72.0 75 48.0
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 2.7e-11 72.0 75 48.0
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 2.7e-11 72.0 78 44.9
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 2.7e-11 72.0 78 46.2
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 2.7e-11 72.0 77 46.8
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 2.7e-11 72.0 77 46.8
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 2.7e-11 72.0 75 48.0
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 2.7e-11 72.0 78 44.9
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 3.5e-11 71.6 78 44.9
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 3.5e-11 71.6 78 46.2
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 3.5e-11 71.6 75 48.0
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 4.5e-11 71.2 77 45.5
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 7.8e-11 70.5 75 48.0
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 7.8e-11 70.5 76 42.1
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 7.8e-11 70.5 75 46.7
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 7.8e-11 70.5 75 46.7
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 7.8e-11 70.5 75 46.7
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 7.8e-11 70.5 75 46.7
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 7.8e-11 70.5 75 48.0
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.0e-10 70.1 78 43.6
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.0e-10 70.1 78 43.6
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 1.0e-10 70.1 75 46.7
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 1.3e-10 69.7 77 46.8
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 1.3e-10 69.7 75 48.0
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 1.3e-10 69.7 75 46.7
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 1.3e-10 69.7 75 46.7
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 1.3e-10 69.7 75 46.7
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 1.3e-10 69.7 75 46.7
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 1.3e-10 69.7 75 46.7
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.7e-10 69.3 75 46.7
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 1.7e-10 69.3 75 46.7
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 1.7e-10 69.3 75 46.7
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.7e-10 69.3 77 45.5
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.7e-10 69.3 82 45.1
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 1.7e-10 69.3 75 45.3
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 1.7e-10 69.3 78 42.3
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 2.3e-10 68.9 78 43.6
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 2.9e-10 68.6 75 45.3
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.8e-10 68.2 75 46.7
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 3.8e-10 68.2 75 44.0
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 5.0e-10 67.8 78 42.3
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 6.6e-10 67.4 72 47.2
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 6.6e-10 67.4 72 47.2
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 6.6e-10 67.4 79 43.0
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 8.6e-10 67.0 75 44.0
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 8.6e-10 67.0 75 45.3
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 1.1e-09 66.6 75 45.3
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.5e-09 66.2 75 45.3
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.5e-09 66.2 75 44.0
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.5e-09 66.2 46 67.4
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 1.9e-09 65.9 75 45.3
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 2.5e-09 65.5 75 44.0
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 2.5e-09 65.5 48 62.5
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.5e-09 65.5 78 44.9
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 4.3e-09 64.7 60 53.3
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 9.5e-09 63.5 75 44.0
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 1.6e-08 62.8 75 42.7
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 8.0e-08 60.5 79 39.2


User provided reference genes

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