Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 0.0e+00 1125.2 681 100.0
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 7.7e-265 917.1 725 66.2
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 3.2e-263 911.8 687 80.3
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.1e-262 909.1 686 81.6
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 1.9e-255 885.9 571 77.6
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.7e-240 836.3 682 75.1
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 5.0e-240 834.7 693 75.3
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 6.6e-240 834.3 682 76.8
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 6.1e-238 827.8 709 71.8
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 2.2e-235 819.3 683 74.5
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 3.7e-235 818.5 685 73.6
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.4e-234 816.6 684 73.7
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.0e-233 812.8 722 69.9
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 5.9e-233 811.2 687 75.0
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.0e-232 810.4 775 66.6
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 2.5e-231 805.8 680 75.0
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 4.3e-231 805.1 687 74.8
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.6e-230 803.1 680 74.4
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 2.8e-230 802.4 687 74.7
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 1.8e-229 799.7 684 72.5
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 2.3e-229 799.3 682 74.6
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 2.0e-228 796.2 675 74.5
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.0e-228 796.2 682 75.8
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 2.0e-228 796.2 695 71.4
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 4.4e-228 795.0 685 74.0
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 2.9e-227 792.3 681 73.7
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-227 792.3 682 75.5
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 3.7e-227 792.0 682 72.7
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.4e-227 791.2 682 75.5
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.4e-227 791.2 682 75.5
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 8.3e-227 790.8 692 74.4
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 8.3e-227 790.8 681 73.9
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 8.3e-227 790.8 681 73.9
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 2.4e-226 789.3 682 71.6
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 7.0e-226 787.7 681 73.7
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 4.6e-225 785.0 683 72.0
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 4.6e-225 785.0 728 60.9
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 4.6e-225 785.0 680 71.9
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 3.9e-224 781.9 693 70.7
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 6.6e-224 781.2 720 59.0
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.5e-223 780.0 686 73.6
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.3e-223 778.5 683 72.2
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 5.6e-223 778.1 683 72.5
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 7.3e-223 777.7 680 71.2
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.6e-222 776.5 691 72.4
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 2.8e-222 775.8 690 69.9
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 3.6e-222 775.4 693 70.4
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 4.7e-222 775.0 681 71.4
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.2e-222 774.6 683 72.0
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 8.1e-222 774.2 683 72.2
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.4e-221 773.5 714 70.7
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 1.8e-221 773.1 571 69.7
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 8.9e-221 770.8 758 67.4
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.2e-220 770.4 681 74.6
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 2.6e-220 769.2 711 68.1
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 3.7e-219 765.4 687 73.7
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 4.9e-219 765.0 680 70.6
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 3.2e-218 762.3 685 69.9
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 3.2e-218 762.3 701 70.3
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 4.1e-218 761.9 687 71.8
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 7.1e-218 761.1 684 71.1
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 9.2e-218 760.8 681 71.1
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 9.2e-218 760.8 683 70.0
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 9.2e-218 760.8 708 69.8
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.5e-217 758.8 681 73.4
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 3.5e-217 758.8 687 73.2
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 7.8e-217 757.7 696 70.7
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 5.1e-216 755.0 682 71.7
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.1e-215 753.8 687 72.9
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 5.6e-215 751.5 692 69.4
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 1.6e-214 750.0 685 71.7
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.2e-212 743.8 576 70.1
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.7e-211 740.0 697 69.6
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 3.7e-211 738.8 734 65.8
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 1.4e-210 736.9 688 71.7
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.6e-209 733.4 688 71.5
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 6.0e-209 731.5 695 67.9
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 6.2e-206 721.5 702 56.1
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 4.0e-205 718.8 681 68.0
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 3.4e-204 715.7 682 67.9
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 7.6e-204 714.5 684 69.7
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 4.2e-202 708.8 684 68.0
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 7.1e-202 708.0 682 68.2
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 3.5e-201 705.7 684 68.6
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 6.0e-201 704.9 684 69.4
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 6.0e-201 704.9 709 65.6
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 3.0e-200 702.6 682 68.0
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 3.9e-200 702.2 682 69.5
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 5.1e-200 701.8 682 69.5
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.1e-199 700.7 719 65.4
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 4.3e-199 698.7 687 66.4
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 7.3e-199 698.0 684 69.0
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 6.2e-198 694.9 773 62.7
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 8.1e-198 694.5 711 58.4
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 8.1e-198 694.5 684 69.2
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 6.9e-197 691.4 695 63.9
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.5e-196 690.3 688 67.6
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.2e-193 680.6 549 79.2
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 2.3e-192 676.4 684 66.7
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 8.7e-192 674.5 680 68.2
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 7.4e-191 671.4 682 67.3
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 5.8e-188 661.8 686 63.6
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 5.8e-188 661.8 733 63.4
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 2.5e-175 619.8 716 61.2
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 3.1e-173 612.8 711 59.5
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 3.4e-172 609.4 694 63.0
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 6.9e-165 585.1 688 58.3
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 5.5e-162 575.5 452 67.3
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.3e-158 564.3 497 62.6
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.5e-154 550.1 1176 41.6
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 5.7e-143 512.3 452 59.3
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.8e-141 507.3 704 55.7
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 3.1e-141 506.5 698 54.4
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 2.2e-139 500.4 683 57.2
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 3.2e-138 496.5 620 59.4
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 3.7e-134 483.0 694 55.2
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 2.1e-129 467.2 699 55.4
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 8.0e-129 465.3 455 54.7
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.0e-103 380.9 336 83.6
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 4.4e-103 379.8 463 47.5
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 4.1e-101 373.2 304 90.5
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.4e-101 372.9 356 79.5
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 3.5e-100 370.2 332 82.8
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.4e-93 347.4 313 58.1
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 2.5e-82 310.8 317 52.4
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.8e-64 251.5 491 37.1
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 3.1e-64 250.8 263 52.5
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 3.8e-62 243.8 630 32.1
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-61 242.3 266 53.0
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 1.9e-61 241.5 192 58.3
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 1.6e-60 238.4 759 40.1
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-54 218.4 235 53.2
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 2.2e-49 201.4 485 32.8
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.3e-46 192.2 148 71.6
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 3.0e-43 181.0 547 29.8
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-38 165.6 98 82.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-36 158.7 92 82.6
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.7e-33 147.5 236 41.1
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 8.2e-33 146.4 214 46.7
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-32 144.4 83 84.3
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 7.0e-32 143.3 236 41.1
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.9e-31 140.2 236 39.8
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-29 136.0 143 53.8
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-29 135.2 84 79.8
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.5e-29 133.7 82 78.0
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 3.6e-28 131.0 152 49.3
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.1e-28 130.2 104 67.3
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 9.7e-26 122.9 93 68.8
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-24 119.4 67 80.6
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 9.1e-24 116.3 82 73.2
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 2.2e-22 111.7 155 94.2
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.5e-22 110.2 69 76.8
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.2e-21 106.7 60 85.0
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.2e-21 106.7 61 82.0
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 9.4e-21 106.3 109 54.1
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-20 105.5 61 80.3
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 4.4e-18 97.4 154 89.6
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 5.9e-15 87.0 188 34.0
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.7e-12 77.4 74 51.4
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 3.0e-11 74.7 224 29.9
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 3.0e-11 74.7 87 49.4
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.8e-11 73.6 60 65.0
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 4.4e-10 70.9 59 57.6
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.3e-09 67.0 33 97.0
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.4e-08 65.1 32 96.9
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.4e-08 65.1 33 93.9
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 5.4e-08 63.9 43 72.1
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.0e-07 62.0 33 90.9
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 7.8e-07 60.1 33 81.8
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-06 58.2 47 53.2
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 5.0e-06 57.4 33 78.8


User provided reference genes

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