Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 0.0e+00 1112.4 565 100.0
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 6.0e-247 857.4 583 78.7
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 5.5e-232 807.7 582 73.4
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 1.6e-228 796.2 605 71.2
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.4e-216 756.5 586 70.8
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.2e-210 736.9 593 71.5
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.3e-209 733.4 493 77.5
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.2e-209 732.6 592 67.9
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 7.2e-208 727.6 595 67.7
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 1.7e-204 716.5 600 64.8
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 1.2e-202 710.3 584 68.2
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 7.7e-202 707.6 635 63.3
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.4e-200 703.4 613 64.1
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 2.5e-200 702.6 565 68.1
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 9.4e-200 700.7 564 68.6
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.6e-199 699.9 595 66.9
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 4.7e-199 698.4 602 64.1
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 6.1e-199 698.0 604 63.9
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.9e-199 697.6 602 64.1
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 7.9e-199 697.6 606 64.0
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 2.3e-198 696.0 572 67.7
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.9e-198 695.3 599 63.6
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.3e-196 690.3 586 67.2
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.8e-196 688.3 617 62.2
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 4.8e-196 688.3 580 64.5
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 6.3e-196 688.0 581 65.9
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.1e-195 687.2 612 61.9
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.1e-195 687.2 601 62.6
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.4e-195 686.8 570 65.6
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.8e-195 686.4 509 74.1
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.8e-195 686.4 566 67.1
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.1e-195 685.3 572 64.2
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 7.0e-195 684.5 602 62.6
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 7.0e-195 684.5 601 63.1
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 9.1e-195 684.1 590 64.7
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 1.2e-194 683.7 577 65.2
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.6e-194 683.3 571 66.4
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 2.0e-194 682.9 602 64.1
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 2.6e-194 682.6 603 63.2
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 2.6e-194 682.6 580 67.4
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 4.5e-194 681.8 600 63.3
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 5.9e-194 681.4 612 63.4
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 5.9e-194 681.4 601 62.1
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.0e-193 680.6 566 66.8
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 2.9e-193 679.1 583 64.7
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.5e-192 676.8 600 64.0
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.2e-191 673.7 560 67.3
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.6e-191 673.3 602 63.8
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.2e-190 668.3 636 60.7
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 8.8e-190 667.5 574 64.8
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 2.2e-188 662.9 588 63.1
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 3.7e-188 662.1 605 63.1
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 4.8e-188 661.8 608 60.0
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 4.8e-188 661.8 601 63.1
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 9.1e-187 657.5 593 60.4
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 1.6e-186 656.8 610 59.2
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 3.5e-186 655.6 626 57.7
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 3.5e-186 655.6 604 61.1
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 1.3e-185 653.7 608 59.7
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.3e-185 653.7 571 63.6
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 5.0e-185 651.7 541 64.9
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 6.5e-185 651.4 598 61.4
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 8.5e-185 651.0 566 63.1
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 8.5e-185 651.0 652 58.1
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.1e-184 650.6 598 59.9
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 5.5e-184 648.3 612 61.1
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 3.0e-182 642.5 591 60.4
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 4.0e-182 642.1 598 59.4
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 4.0e-182 642.1 609 59.8
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 4.0e-182 642.1 594 60.9
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 2.0e-181 639.8 599 60.9
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 3.4e-181 639.0 610 58.2
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 4.4e-181 638.6 587 60.1
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 7.5e-181 637.9 646 55.9
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 1.3e-180 637.1 592 59.6
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 2.2e-180 636.3 582 61.0
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 3.7e-180 635.6 584 61.3
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.8e-179 633.3 572 60.8
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 4.5e-178 628.6 605 60.0
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.3e-177 627.1 603 58.7
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 1.7e-177 626.7 608 59.7
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 3.8e-177 625.5 595 59.5
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 1.5e-176 623.6 585 60.2
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 3.2e-176 622.5 576 59.9
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 2.8e-175 619.4 589 59.8
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 4.7e-175 618.6 600 59.3
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 4.7e-175 618.6 596 58.9
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 8.0e-175 617.8 618 58.9
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.8e-174 616.7 620 59.0
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.3e-174 616.3 593 58.5
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.3e-174 616.3 567 60.0
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.0e-174 615.9 527 66.0
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 4.0e-174 615.5 578 61.8
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.0e-174 615.5 602 58.0
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 8.8e-174 614.4 648 57.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-172 610.5 591 58.9
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 2.8e-172 609.4 594 59.1
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 5.4e-171 605.1 607 58.2
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 7.0e-171 604.7 589 57.9
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.7e-169 600.1 619 57.4
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 2.3e-169 599.7 567 59.8
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 5.0e-169 598.6 534 63.1
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.5e-168 597.0 626 55.6
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 2.8e-167 592.8 575 57.0
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 4.7e-167 592.0 591 57.5
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 1.4e-166 590.5 587 58.4
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.3e-164 583.9 595 54.5
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 2.9e-164 582.8 577 56.8
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.4e-163 580.5 599 55.3
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 3.2e-163 579.3 595 54.3
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 5.4e-163 578.6 595 54.3
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 9.2e-163 577.8 601 54.6
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 4.6e-162 575.5 572 56.3
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 4.6e-162 575.5 572 56.5
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 5.9e-162 575.1 637 52.3
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 5.9e-162 575.1 637 52.0
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 1.7e-161 573.5 572 54.9
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 6.6e-161 571.6 598 53.8
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 6.6e-161 571.6 599 54.4
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 6.6e-161 571.6 572 57.0
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.1e-160 570.9 585 56.2
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 8.0e-159 564.7 553 59.0
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.4e-158 563.9 574 56.8
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 7.0e-155 551.6 567 55.0
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 7.0e-155 551.6 556 57.0
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 9.2e-155 551.2 480 64.0
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 5.6e-152 542.0 469 63.8
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 7.3e-152 541.6 597 52.4
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 2.8e-151 539.7 598 52.2
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 5.2e-150 535.4 546 55.7
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 6.4e-148 528.5 548 54.6
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 8.3e-148 528.1 568 53.7
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.3e-145 520.8 498 59.2
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 9.0e-134 481.5 597 48.4
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.0e-133 480.3 552 51.1
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.4e-131 474.2 576 48.6
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 5.4e-131 472.2 595 49.7
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.7e-130 469.9 321 74.1
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 5.3e-126 455.7 552 50.2
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 5.3e-126 455.7 558 48.7
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 7.6e-125 451.8 425 57.4
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 8.7e-121 438.3 386 64.5
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 4.5e-117 426.0 447 53.9
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 7.6e-117 425.2 316 71.8
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.3e-104 383.3 328 64.0
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 8.5e-100 368.6 391 55.2
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 1.1e-99 368.2 345 59.4
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 6.9e-94 349.0 632 36.7
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.1e-62 245.4 152 84.2
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 8.6e-60 235.7 252 56.3
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.2e-56 225.3 255 54.9
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 1.4e-54 218.4 229 59.0
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 8.0e-50 202.6 138 78.3
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 3.0e-28 131.0 532 23.3
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 6.6e-28 129.8 148 55.4
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 9.5e-27 125.9 481 24.5
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 4.7e-26 123.6 318 29.2
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 4.9e-23 113.6 123 52.0
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 7.1e-22 109.8 98 56.1
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 2.7e-21 107.8 69 68.1
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 3.5e-21 107.5 83 62.7
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 6.2e-18 96.7 66 80.3
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.1e-17 95.9 197 35.0
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 7.6e-16 89.7 135 44.4
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.2e-15 88.2 62 72.6
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.1e-14 85.9 101 48.5
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 9.3e-14 82.8 103 48.5
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.3e-10 72.4 146 37.0
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 3.4e-08 64.3 72 51.4
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 7.6e-08 63.2 35 85.7
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 2.2e-07 61.6 36 83.3
Ca_07189_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 2.4e-06 58.2 273 24.9
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 5.4e-06 57.0 306 28.1


User provided reference genes

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