Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007999 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 4.6e-43 177.6 95 100.0
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 7.5e-25 117.1 93 71.0
CSS0017244 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 2.0e-22 109.0 97 70.1
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 1.0e-21 106.7 95 68.4
CSS0023591 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.3e-21 106.3 59 98.3
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 5.0e-21 104.4 90 63.3
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 5.0e-21 104.4 90 66.7
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 6.5e-21 104.0 90 63.3
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 8.5e-21 103.6 90 64.4
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 8.5e-21 103.6 70 75.7
CSS0033661 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 9.4e-20 100.1 102 64.7
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 8.0e-19 97.1 90 62.2
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 1.0e-18 96.7 90 62.2
QL10p008629 Quercus lobata HOM05D003444 ORTHO05D003963 1.0e-18 96.7 90 62.2
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 1.0e-18 96.7 82 65.9
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 1.8e-18 95.9 63 77.8
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 3.0e-18 95.1 90 61.1
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 3.0e-18 95.1 90 61.1
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 3.0e-18 95.1 95 56.8
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 4.0e-18 94.7 92 59.8
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 5.2e-18 94.4 90 61.1
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 5.2e-18 94.4 67 70.1
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 6.8e-18 94.0 67 71.6
Oeu046785.1 Olea europaea HOM05D003444 ORTHO05D003963 8.8e-18 93.6 94 55.3
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 8.8e-18 93.6 91 57.1
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 8.8e-18 93.6 93 58.1
Cc04_g12590 Coffea canephora HOM05D003444 ORTHO05D003963 1.2e-17 93.2 82 62.2
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 1.2e-17 93.2 90 58.9
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 1.5e-17 92.8 92 57.6
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 2.0e-17 92.4 94 58.5
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 2.0e-17 92.4 90 56.7
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 2.6e-17 92.0 89 59.6
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 3.4e-17 91.7 94 62.8
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 3.4e-17 91.7 90 56.7
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 4.4e-17 91.3 90 55.6
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 5.7e-17 90.9 90 58.9
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 7.5e-17 90.5 78 60.3
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 7.5e-17 90.5 91 60.4
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 7.5e-17 90.5 97 57.7
arahy.Tifrunner.gnm1.ann1.NDZJ5A Arachis hypogaea HOM05D003444 ORTHO05D003963 9.8e-17 90.1 80 61.2
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 9.8e-17 90.1 95 55.8
TAR374G1632 Trochodendron aralioides HOM05D003444 ORTHO05D003963 9.8e-17 90.1 90 57.8
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 1.3e-16 89.7 85 56.5
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 2.2e-16 89.0 97 52.6
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 2.2e-16 89.0 91 56.0
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 2.8e-16 88.6 69 66.7
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 3.7e-16 88.2 85 55.3
Duzib068G1143 Durio zibethinus HOM05D003444 ORTHO05D003963 4.8e-16 87.8 83 61.4
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 6.3e-16 87.4 84 56.0
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 6.3e-16 87.4 59 74.6
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 8.3e-16 87.0 67 67.2
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 8.3e-16 87.0 90 56.7
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 8.3e-16 87.0 83 61.4
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 8.3e-16 87.0 110 55.5
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.1e-15 86.7 66 66.7
Migut.O00133 Erythranthe guttata HOM05D003444 ORTHO05D003963 1.1e-15 86.7 83 55.4
arahy.Tifrunner.gnm1.ann1.V3MNVK Arachis hypogaea HOM05D003444 ORTHO05D003963 1.8e-15 85.9 74 55.4
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 1.8e-15 85.9 74 58.1
Gohir.D07G067800 Gossypium hirsutum HOM05D003444 ORTHO05D003963 1.8e-15 85.9 83 61.4
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 1.8e-15 85.9 85 52.9
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 2.4e-15 85.5 89 56.2
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 2.4e-15 85.5 99 54.5
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 3.1e-15 85.1 65 67.7
TWI75G1457 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 4.1e-15 84.7 95 51.6
HanXRQChr16g0504631 Helianthus annuus HOM05D003444 ORTHO05D003963 7.0e-15 84.0 92 52.2
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 7.0e-15 84.0 90 54.4
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 9.1e-15 83.6 68 64.7
AUR62008171 Chenopodium quinoa HOM05D003444 ORTHO05D003963 9.1e-15 83.6 67 65.7
AUR62028748 Chenopodium quinoa HOM05D003444 ORTHO05D003963 9.1e-15 83.6 67 65.7
TPR.G37557 Trifolium pratense HOM05D003444 ORTHO05D003963 9.1e-15 83.6 70 61.4
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 1.2e-14 83.2 93 54.8
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 1.6e-14 82.8 56 73.2
TWI79G0312 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 1.6e-14 82.8 89 49.4
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 2.0e-14 82.4 91 53.8
arahy.Tifrunner.gnm1.ann1.N3JE1D Arachis hypogaea HOM05D003444 ORTHO05D003963 2.7e-14 82.0 74 54.1
vmacro19322 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 2.7e-14 82.0 126 46.8
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 4.5e-14 81.3 56 75.0
COL.COLO4_30111 Corchorus olitorius HOM05D003444 ORTHO05D003963 4.5e-14 81.3 92 55.4
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 5.9e-14 80.9 84 52.4
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 7.7e-14 80.5 56 73.2
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 1.0e-13 80.1 82 58.5
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 1.0e-13 80.1 95 50.5
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 1.0e-13 80.1 58 72.4
arahy.Tifrunner.gnm1.ann1.T862AX Arachis hypogaea HOM05D003444 ORTHO05D003963 1.3e-13 79.7 90 46.7
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 1.7e-13 79.3 64 62.5
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 1.7e-13 79.3 90 50.0
Sc12g0005130 Simmondsia chinensis HOM05D003444 ORTHO05D003963 1.7e-13 79.3 56 66.1
CDE11G0533 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 2.3e-13 79.0 62 64.5
TPR.G7254 Trifolium pratense HOM05D003444 ORTHO05D003963 2.3e-13 79.0 66 59.1
BcaC08g44673 Brassica carinata HOM05D003444 ORTHO05D003963 2.9e-13 78.6 56 71.4
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 2.9e-13 78.6 56 71.4
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 2.9e-13 78.6 56 71.4
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 2.9e-13 78.6 67 58.2
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 2.9e-13 78.6 56 71.4
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 2.9e-13 78.6 67 58.2
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 2.9e-13 78.6 56 71.4
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 2.9e-13 78.6 67 58.2
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 2.9e-13 78.6 56 71.4
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 2.9e-13 78.6 54 72.2
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 3.8e-13 78.2 89 49.4
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 3.8e-13 78.2 56 71.4
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 3.8e-13 78.2 94 51.1
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 5.0e-13 77.8 67 61.2
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 6.5e-13 77.4 95 51.6
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 1.1e-12 76.6 67 56.7
Medtr3g077320 Medicago truncatula HOM05D003444 ORTHO05D003963 1.1e-12 76.6 67 59.7
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 1.5e-12 76.3 66 59.1
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 1.5e-12 76.3 56 69.6
Lj4g0001447 Lotus japonicus HOM05D003444 ORTHO05D003963 1.5e-12 76.3 90 51.1
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 1.5e-12 76.3 89 52.8
Actinidia33091 Actinidia chinensis HOM05D003444 ORTHO05D003963 1.9e-12 75.9 86 55.8
arahy.Tifrunner.gnm1.ann1.P2M8BS Arachis hypogaea HOM05D003444 ORTHO05D003963 3.2e-12 75.1 100 43.0
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 9.5e-12 73.6 61 63.9
Psat4g060120 Pisum sativum HOM05D003444 ORTHO05D003963 9.5e-12 73.6 74 51.4
SGA_v2.0_scaffold90G27871 Striga asiatica HOM05D003444 ORTHO05D003963 1.6e-11 72.8 66 56.1
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 2.8e-11 72.0 95 48.4
unitig_8.g3056 Utricularia gibba HOM05D003444 ORTHO05D003963 2.8e-11 72.0 93 48.4
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 3.6e-11 71.6 47 74.5
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 6.1e-11 70.9 61 62.3
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 6.1e-11 70.9 91 45.1
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 1.8e-10 69.3 42 78.6
Zm00001eb209200 Zea mays HOM05D003444 ORTHO05D003963 1.8e-10 69.3 67 53.7
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 3.0e-10 68.6 89 46.1
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 3.0e-10 68.6 93 46.2
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 4.0e-10 68.2 46 71.7
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 5.2e-10 67.8 98 42.9
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 5.2e-10 67.8 95 48.4
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 6.8e-10 67.4 41 78.0
Zm00001eb231610 Zea mays HOM05D003444 ORTHO05D003963 8.8e-10 67.0 68 54.4
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 1.2e-09 66.6 45 73.3
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 1.5e-09 66.2 46 71.7
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 2.8e-08 62.0 55 56.4
Lj1g0020971 Lotus japonicus HOM05D003444 ORTHO05D003963 8.3e-08 60.5 39 76.9
HanXRQChr01g0018841 Helianthus annuus HOM05D003444 ORTHO05D003963 1.1e-07 60.1 66 47.0
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 9.2e-07 57.0 87 47.1
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 9.2e-07 57.0 38 71.1
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 1.2e-06 56.6 84 46.4


User provided reference genes

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