Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.0e-223 777.7 378 100.0
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.0e-213 746.5 363 99.4
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.2e-190 669.8 363 88.4
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 6.3e-184 647.5 363 86.2
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 4.1e-183 644.8 363 85.7
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.0e-178 630.2 357 84.0
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 3.0e-178 628.6 363 82.1
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 6.8e-178 627.5 363 82.9
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.2e-177 626.7 363 81.8
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 7.5e-177 624.0 363 83.2
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 1.7e-176 622.9 363 82.4
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 2.2e-176 622.5 394 79.4
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.4e-175 619.0 363 80.7
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 4.1e-175 618.2 350 83.4
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 7.0e-175 617.5 348 83.9
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 3.5e-174 615.1 348 83.3
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 5.9e-174 614.4 355 81.4
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.0e-173 613.6 361 81.2
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.7e-173 612.8 358 80.7
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 6.5e-173 610.9 353 81.3
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 1.1e-172 610.1 348 82.8
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.2e-171 606.7 355 80.6
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 1.6e-171 606.3 353 80.5
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.1e-171 605.9 348 81.3
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 2.7e-171 605.5 348 81.3
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 1.4e-170 603.2 347 81.3
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.8e-170 602.8 356 79.8
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 2.3e-170 602.4 465 66.9
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 4.0e-170 601.7 363 79.3
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 6.8e-170 600.9 353 79.6
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 6.8e-170 600.9 348 81.0
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 1.2e-169 600.1 356 80.1
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 3.4e-169 598.6 352 79.8
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 4.4e-169 598.2 363 78.5
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 4.4e-169 598.2 349 80.2
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 1.7e-168 596.3 358 80.2
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.2e-168 595.9 360 78.3
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 2.2e-168 595.9 349 80.2
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.8e-168 595.5 355 78.3
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 2.8e-168 595.5 358 79.6
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 4.9e-168 594.7 355 78.0
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 4.9e-168 594.7 363 78.8
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 6.3e-168 594.3 356 78.1
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 6.3e-168 594.3 358 79.3
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 8.3e-168 594.0 348 81.0
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 8.3e-168 594.0 363 79.9
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.1e-167 593.6 363 78.0
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.4e-167 593.2 355 78.6
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 1.8e-167 592.8 352 79.0
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 2.4e-167 592.4 348 79.6
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 5.4e-167 591.3 358 76.5
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 7.0e-167 590.9 365 76.4
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.0e-166 589.3 358 78.8
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 2.0e-166 589.3 358 76.3
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 2.7e-166 589.0 358 78.8
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 2.7e-166 589.0 348 79.3
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.5e-166 588.6 358 78.8
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 3.5e-166 588.6 353 78.8
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.0e-165 587.0 361 76.2
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 1.7e-165 586.3 348 79.0
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 1.7e-165 586.3 363 76.0
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 2.3e-165 585.9 357 77.3
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 2.9e-165 585.5 348 79.0
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.8e-165 585.1 358 77.9
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 5.0e-165 584.7 348 79.0
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 1.1e-164 583.6 348 77.6
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.1e-164 583.6 360 78.1
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 1.5e-164 583.2 357 75.6
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 4.3e-164 581.6 348 78.4
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 5.6e-164 581.3 348 78.7
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 7.3e-164 580.9 358 77.9
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 9.5e-164 580.5 351 78.1
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 4.7e-163 578.2 348 77.3
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 8.0e-163 577.4 348 77.3
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 1.8e-162 576.2 422 67.5
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 2.3e-162 575.9 348 77.9
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 3.0e-162 575.5 348 77.0
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 4.0e-162 575.1 362 74.6
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 5.2e-162 574.7 347 76.1
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 5.2e-162 574.7 362 74.3
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.5e-161 573.2 356 75.3
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 2.0e-161 572.8 363 74.4
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 3.4e-161 572.0 347 77.8
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 1.2e-158 563.5 346 76.0
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 1.2e-158 563.5 347 75.8
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 4.6e-158 561.6 346 75.1
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 1.0e-157 560.5 346 75.7
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 1.0e-157 560.5 346 75.1
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 1.3e-157 560.1 356 73.6
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 3.0e-157 558.9 347 76.4
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 5.0e-157 558.1 365 72.3
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 6.6e-157 557.8 356 73.6
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 1.1e-156 557.0 356 73.6
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 1.1e-156 557.0 363 73.6
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 9.5e-156 553.9 356 73.3
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 9.5e-156 553.9 356 73.3
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 4.0e-154 548.5 353 75.4
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 2.6e-153 545.8 355 73.5
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 9.8e-153 543.9 348 75.3
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.2e-151 538.9 348 74.7
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 5.0e-149 531.6 347 73.2
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 6.6e-149 531.2 347 73.2
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 3.3e-148 528.9 348 71.0
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 5.6e-148 528.1 323 76.2
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 1.6e-147 526.6 330 77.0
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 8.1e-147 524.2 308 77.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 5.8e-145 518.1 348 69.5
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 4.9e-144 515.0 308 76.9
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 1.1e-143 513.8 348 72.4
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 1.4e-143 513.5 356 68.8
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 1.4e-143 513.5 346 69.9
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.2e-143 512.3 376 67.6
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 7.1e-143 511.1 346 69.7
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 5.6e-140 501.5 349 68.8
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 9.5e-140 500.7 345 68.4
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 2.6e-137 492.7 347 68.6
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.7e-136 490.0 308 76.0
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.2e-134 483.8 346 67.6
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.3e-132 475.7 348 66.1
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 4.0e-130 468.8 346 65.9
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 2.0e-129 466.5 349 61.6
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.7e-128 463.4 261 85.4
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 4.5e-121 438.7 348 64.1
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 3.9e-117 425.6 269 74.7
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.1e-115 419.9 317 66.6
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 3.6e-115 419.1 256 77.3
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 3.8e-112 409.1 359 56.3
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 8.1e-107 391.3 335 63.3
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.4e-90 337.4 221 68.3
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 8.5e-88 328.2 388 47.2
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 1.3e-83 314.3 197 75.1
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.9e-79 300.4 242 58.7
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 2.5e-79 300.1 300 51.3
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 1.2e-60 238.0 140 83.6
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 7.2e-55 218.8 176 59.7
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-53 212.6 163 58.9
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 4.0e-45 186.4 182 57.1
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 1.6e-38 164.5 101 80.2
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 2.6e-36 157.1 85 88.2
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.4e-34 151.4 90 77.8
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 6.0e-17 92.8 65 81.5
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 8.7e-16 89.0 57 63.2
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 1.2e-12 78.6 62 66.1
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 4.4e-12 76.6 47 83.0
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 4.4e-12 76.6 47 83.0
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 4.9e-11 73.2 56 58.9
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.1e-08 63.2 30 90.0
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 2.1e-06 57.8 45 64.4
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 2.1e-06 57.8 53 62.3


User provided reference genes

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