Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007978 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D028395 2.3e-34 148.3 71 100.0
GSVIVG01013268001 Vitis vinifera HOM05D001092 ORTHO05D000923 4.3e-17 90.9 54 79.6
Dinv28897 Davidia involucrata HOM05D001092 ORTHO05D000923 9.5e-17 89.7 55 78.2
Atru.chr9.1144 Acer truncatum HOM05D001092 ORTHO05D000923 2.8e-16 88.2 55 76.4
Actinidia25929 Actinidia chinensis HOM05D001092 ORTHO05D000923 2.8e-16 88.2 55 80.0
CsaV3_3G049680 Cucumis sativus L. HOM05D001092 ORTHO05D000923 6.2e-16 87.0 55 74.5
ClCG09G012520 Citrullus lanatus HOM05D001092 ORTHO05D000923 8.1e-16 86.7 55 76.4
Rhsim11G0008300 Rhododendron simsii HOM05D001092 ORTHO05D000923 8.1e-16 86.7 53 77.4
TPR.G33938 Trifolium pratense HOM05D001092 ORTHO05D000923 1.8e-15 85.5 54 72.2
Actinidia03403 Actinidia chinensis HOM05D001092 ORTHO05D000923 3.1e-15 84.7 52 76.9
MELO3C003359.2 Cucumis melo HOM05D001092 ORTHO05D000923 4.0e-15 84.3 55 70.9
TWI60G0589 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 4.0e-15 84.3 55 76.4
DCAR_000729 Daucus carota HOM05D001092 ORTHO05D000923 5.2e-15 84.0 54 74.1
Nn1g00699 Nelumbo nucifera HOM05D001092 ORTHO05D000923 5.2e-15 84.0 55 70.9
FAN08G1156 Fragaria x ananassa HOM05D001092 ORTHO05D000923 6.8e-15 83.6 54 68.5
Sed0007068 Sechium edule HOM05D001092 ORTHO05D000923 6.8e-15 83.6 55 74.5
Medtr5g013780 Medicago truncatula HOM05D001092 ORTHO05D000923 8.9e-15 83.2 54 72.2
Phvul.002G003000 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 8.9e-15 83.2 61 67.2
Lj2g0026983 Lotus japonicus HOM05D001092 ORTHO05D000923 1.5e-14 82.4 54 70.4
Ciclev10018424m.g Citrus clementina HOM05D001092 ORTHO05D000923 2.0e-14 82.0 54 74.1
COL.COLO4_06705 Corchorus olitorius HOM05D001092 ORTHO05D000923 2.0e-14 82.0 56 75.0
Ca_26022_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 2.6e-14 81.6 54 70.4
MBI04_g20742_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 2.6e-14 81.6 53 77.4
Psat2g175240 Pisum sativum HOM05D001092 ORTHO05D000923 2.6e-14 81.6 54 70.4
Thecc.03G236900 Theobroma cacao HOM05D001092 ORTHO05D000923 2.6e-14 81.6 55 74.5
Cfa012359 Carpinus fangiana HOM05D001092 ORTHO05D000923 3.4e-14 81.3 54 68.5
Gohir.A08G161600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 3.4e-14 81.3 55 70.9
Gohir.D08G181600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 5.8e-14 80.5 55 69.1
Gorai.004G190500 Gossypium raimondii HOM05D001092 ORTHO05D000923 5.8e-14 80.5 55 69.1
RcHm_v2.0_Chr7g0207821 Rosa chinensis HOM05D001092 ORTHO05D000923 5.8e-14 80.5 54 68.5
Aqoxy3G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 7.5e-14 80.1 53 73.6
ATR0829G162 Amborella trichopoda HOM05D001092 ORTHO05D000923 9.9e-14 79.7 52 71.2
arahy.Tifrunner.gnm1.ann1.G3NGVJ Arachis hypogaea HOM05D001092 ORTHO05D000923 9.9e-14 79.7 60 66.7
arahy.Tifrunner.gnm1.ann1.PHJ2IJ Arachis hypogaea HOM05D001092 ORTHO05D000923 9.9e-14 79.7 60 66.7
FAN18G3751 Fragaria x ananassa HOM05D001092 ORTHO05D000923 2.2e-13 78.6 54 64.8
TAR629G2120 Trochodendron aralioides HOM05D001092 ORTHO05D000923 2.2e-13 78.6 53 73.6
FvH4_5g20820 Fragaria vesca HOM05D001092 ORTHO05D000923 2.9e-13 78.2 52 65.4
MD04G1057200 Malus domestica HOM05D001092 ORTHO05D000923 3.7e-13 77.8 54 66.7
Aa31LG2G13220 Aethionema arabicum HOM05D001092 ORTHO05D000923 4.9e-13 77.4 55 65.5
HanXRQChr17g0535661 Helianthus annuus HOM05D001092 ORTHO05D000923 6.4e-13 77.0 55 67.3
ECA246G3294 Erigeron canadensis HOM05D001092 ORTHO05D000923 8.3e-13 76.6 55 67.3
FAN04G0578 Fragaria x ananassa HOM05D001092 ORTHO05D000923 1.4e-12 75.9 54 66.7
Potri.001G148800 Populus trichocarpa HOM05D001092 ORTHO05D000923 1.9e-12 75.5 55 65.5
MBI17_g28777_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D028395 2.4e-12 75.1 50 76.0
CARHR223710 Cardamine hirsuta HOM05D001092 ORTHO05D000923 3.2e-12 74.7 55 61.8
Sp7g17050 Schrenkiella parvula HOM05D001092 ORTHO05D000923 4.1e-12 74.3 55 61.8
Cpa.g.sc98.54 Carica papaya HOM05D001092 ORTHO05D000923 5.4e-12 73.9 56 73.2
A08p12900 Brassica napus HOM05D001092 ORTHO05D000923 7.1e-12 73.6 55 61.8
Sc07g0008990 Simmondsia chinensis HOM05D001092 ORTHO05D000923 7.1e-12 73.6 54 64.8
AL7G37590 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 9.2e-12 73.2 55 60.0
CANSAT21G2480 Cannabis sativa HOM05D001092 ORTHO05D000923 9.2e-12 73.2 55 69.1
PSO063G3710 Papaver somniferum HOM05D001092 ORTHO05D000923 1.2e-11 72.8 53 66.0
PGR031G0629 Punica granatum HOM05D001092 ORTHO05D000923 1.2e-11 72.8 52 63.5
Cc08_g01550 Coffea canephora HOM05D001092 ORTHO05D000923 1.6e-11 72.4 55 63.6
Lsat_1_v5_gn_3_15901 Lactuca sativa HOM05D001092 ORTHO05D000923 1.6e-11 72.4 54 66.7
Duzib205G0058 Durio zibethinus HOM05D001092 ORTHO05D000923 2.1e-11 72.0 56 67.9
Sabra01G0118800 Salix brachista HOM05D001092 ORTHO05D000923 2.1e-11 72.0 68 54.4
CDE02G1948 Ceratophyllum demersum HOM05D001092 ORTHO05D000923 2.7e-11 71.6 61 59.0
Glyma.11G039900 Glycine max HOM05D001092 ORTHO05D000923 2.7e-11 71.6 61 59.0
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 2.7e-11 71.6 54 59.3
Carub.0007s2427 Capsella rubella HOM05D001092 ORTHO05D000923 3.5e-11 71.2 55 58.2
CiPaw.12G058400 Carya illinoinensis HOM05D001092 ORTHO05D000923 3.5e-11 71.2 54 64.8
MD06G1043800 Malus domestica HOM05D001092 ORTHO05D000923 3.5e-11 71.2 54 61.1
Oeu033911.2 Olea europaea HOM05D001092 ORTHO05D000923 3.5e-11 71.2 52 69.2
Manes.17G019783 Manihot esculenta HOM05D001092 ORTHO05D000923 4.6e-11 70.9 55 63.6
SHI07563 Sapria himalayana HOM05D001092 ORTHO05D000923 6.0e-11 70.5 53 62.3
SEGI_29217 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 1.3e-10 69.3 55 61.8
EL10Ac5g12216 Beta vulgaris HOM05D001092 ORTHO05D000923 1.7e-10 68.9 57 59.6
Gohir.D03G169100 Gossypium hirsutum HOM05D001092 ORTHO05D000923 3.9e-10 67.8 56 62.5
Gorai.003G179200 Gossypium raimondii HOM05D001092 ORTHO05D000923 3.9e-10 67.8 56 62.5
Mapoly0105s0039 Marchantia polymorpha HOM05D001092 ORTHO05D000923 5.1e-10 67.4 52 57.7
THA.LOC104814451 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 5.1e-10 67.4 55 56.4
Ah.12g053800 Amaranthus hybridus HOM05D001092 ORTHO05D000923 8.6e-10 66.6 57 59.6
MSTRG.1961 Avicennia marina HOM05D001092 ORTHO05D000923 1.1e-09 66.2 54 61.1
Sopen08g026080 Solanum pennellii HOM05D001092 ORTHO05D000923 1.1e-09 66.2 54 63.0
SGA_v2.0_scaffold20G09243 Striga asiatica HOM05D001092 ORTHO05D000923 1.5e-09 65.9 55 61.8
Peaxi162Scf00084g00118 Petunia axillaris HOM05D001092 ORTHO05D000923 1.9e-09 65.5 54 61.1
Zm00001eb390790 Zea mays HOM05D001092 ORTHO05D000923 1.9e-09 65.5 57 54.4
Nitab4.5_0001255g0080 Nicotiana tabacum HOM05D001092 ORTHO05D000923 3.3e-09 64.7 54 63.0
CAN.G1445.5 Capsicum annuum HOM05D001092 ORTHO05D000923 4.3e-09 64.3 54 61.1
Pp3c22_21110 Physcomitrium patens HOM05D001092 ORTHO05D000923 4.3e-09 64.3 55 50.9
MBI14_g38380_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D028395 9.5e-09 63.2 43 72.1
BolC8t48437H Brassica oleracea HOM05D001092 ORTHO05D000923 1.2e-08 62.8 53 58.5
BraA08t33273Z Brassica rapa HOM05D001092 ORTHO05D000923 1.2e-08 62.8 53 58.5
AUR62007201 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.2e-08 62.8 56 57.1
Lalb_Chr16g0379281 Lupinus albus HOM05D001092 ORTHO05D000923 1.2e-08 62.8 61 54.1
AUR62018801 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.6e-08 62.4 56 55.4
MBI18_g30544_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D028395 1.6e-08 62.4 43 72.1
Nitab4.5_0006135g0040 Nicotiana tabacum HOM05D001092 ORTHO05D000923 2.1e-08 62.0 54 64.8
Aa31LG2G13570 Aethionema arabicum HOM05D001092 ORTHO05D000923 6.2e-08 60.5 38 71.1
unitig_21.g20375 Utricularia gibba HOM05D001092 ORTHO05D000923 8.1e-08 60.1 53 58.5
AagrBONN_evm.TU.Sc2ySwM_362.876 Anthoceros agrestis HOM05D001092 ORTHO05D000923 2.4e-07 58.5 52 48.1
Haze_08328 Corylus avellana HOM05D001092 ORTHO05D000923 6.8e-07 57.0 54 51.9
HPP92_014925 Vanilla planifolia HOM05D001092 ORTHO05D000923 2.6e-06 55.1 48 60.4
HPP92_014930 Vanilla planifolia HOM05D001092 ORTHO05D000923 2.6e-06 55.1 46 63.0


User provided reference genes

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