Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007910 Camellia sinensis var. sinensis HOM05D000467 ORTHO05D000379 1.6e-32 142.1 72 100.0
Rhsim11G0027400 Rhododendron simsii HOM05D000467 ORTHO05D000379 3.3e-17 91.3 65 73.8
Dinv15834 Davidia involucrata HOM05D000467 ORTHO05D000379 1.6e-16 89.0 65 72.3
vmacro00233 Vaccinium macrocarpon HOM05D000467 ORTHO05D000379 1.4e-15 85.9 65 69.2
MSTRG.1784 Avicennia marina HOM05D000467 ORTHO05D000379 9.0e-15 83.2 65 66.2
Oeu044980.1 Olea europaea HOM05D000467 ORTHO05D000379 1.2e-14 82.8 64 65.6
Peaxi162Scf00408g00318 Petunia axillaris HOM05D000467 ORTHO05D000379 4.5e-14 80.9 65 64.6
Solyc08g076030.3 Solanum lycopersicum HOM05D000467 ORTHO05D000379 1.3e-13 79.3 65 63.1
GSVIVG01024440001 Vitis vinifera HOM05D000467 ORTHO05D000379 1.3e-13 79.3 62 62.9
Sopen08g024680 Solanum pennellii HOM05D000467 ORTHO05D000379 1.7e-13 79.0 65 63.1
Duzib106G0790 Durio zibethinus HOM05D000467 ORTHO05D000379 2.2e-13 78.6 65 63.1
Migut.A00578 Erythranthe guttata HOM05D000467 ORTHO05D000379 2.2e-13 78.6 65 64.6
Oeu051425.1 Olea europaea HOM05D000467 ORTHO05D000379 2.2e-13 78.6 65 63.1
CDE02G1927 Ceratophyllum demersum HOM05D000467 ORTHO05D000379 2.9e-13 78.2 60 65.0
CDE11G0037 Ceratophyllum demersum HOM05D000467 ORTHO05D000379 2.9e-13 78.2 60 65.0
Actinidia14760 Actinidia chinensis HOM05D000467 ORTHO05D000379 3.8e-13 77.8 65 66.2
Nn1g01974 Nelumbo nucifera HOM05D000467 ORTHO05D000379 3.8e-13 77.8 60 65.0
Eucgr.K00093 Eucalyptus grandis HOM05D000467 ORTHO05D000379 5.0e-13 77.4 79 54.4
Nitab4.5_0009866g0010 Nicotiana tabacum HOM05D000467 ORTHO05D000379 5.0e-13 77.4 65 61.5
Atru.chr12.1983 Acer truncatum HOM05D000467 ORTHO05D000379 6.5e-13 77.0 66 62.1
CSS0044438 Camellia sinensis var. sinensis HOM05D000467 ORTHO05D000379 8.5e-13 76.6 41 87.8
Manes.08G164000 Manihot esculenta HOM05D000467 ORTHO05D000379 8.5e-13 76.6 63 63.5
Manes.09G124300 Manihot esculenta HOM05D000467 ORTHO05D000379 8.5e-13 76.6 76 57.9
HanXRQChr03g0081401 Helianthus annuus HOM05D000467 ORTHO05D000379 1.1e-12 76.3 63 61.9
HanXRQChr03g0081581 Helianthus annuus HOM05D000467 ORTHO05D000379 1.1e-12 76.3 63 61.9
Nitab4.5_0000543g0060 Nicotiana tabacum HOM05D000467 ORTHO05D000379 1.1e-12 76.3 65 61.5
MSTRG.11894 Avicennia marina HOM05D000467 ORTHO05D000379 1.4e-12 75.9 65 60.0
Thecc.05G208600 Theobroma cacao HOM05D000467 ORTHO05D000379 2.5e-12 75.1 65 61.5
HPP92_009023 Vanilla planifolia HOM05D000467 ORTHO05D000379 5.5e-12 73.9 63 55.6
CANSAT21G2047 Cannabis sativa HOM05D000467 ORTHO05D000379 7.2e-12 73.6 60 61.7
QL09p025514 Quercus lobata HOM05D000467 ORTHO05D000379 7.2e-12 73.6 63 58.7
Sabra13G0071700 Salix brachista HOM05D000467 ORTHO05D000379 7.2e-12 73.6 62 64.5
Cc00_g11550 Coffea canephora HOM05D000467 ORTHO05D000379 1.2e-11 72.8 64 59.4
COL.COLO4_06381 Corchorus olitorius HOM05D000467 ORTHO05D000379 1.2e-11 72.8 65 58.5
Cc08_g04100 Coffea canephora HOM05D000467 ORTHO05D000379 2.1e-11 72.0 64 59.4
Haze_00597 Corylus avellana HOM05D000467 ORTHO05D000379 2.1e-11 72.0 62 58.1
TAR374G0748 Trochodendron aralioides HOM05D000467 ORTHO05D000379 2.1e-11 72.0 63 60.3
Ciclev10018590m.g Citrus clementina HOM05D000467 ORTHO05D000379 3.6e-11 71.2 60 63.3
Cc08_g04210 Coffea canephora HOM05D000467 ORTHO05D000379 3.6e-11 71.2 64 60.9
Lsat_1_v5_gn_5_63700 Lactuca sativa HOM05D000467 ORTHO05D000379 3.6e-11 71.2 68 57.4
Nn3g19292 Nelumbo nucifera HOM05D000467 ORTHO05D000379 3.6e-11 71.2 64 60.9
Nn3g19293 Nelumbo nucifera HOM05D000467 ORTHO05D000379 3.6e-11 71.2 64 60.9
CiPaw.06G019800 Carya illinoinensis HOM05D000467 ORTHO05D000379 4.6e-11 70.9 60 60.0
Potri.013G081300 Populus trichocarpa HOM05D000467 ORTHO05D000379 6.1e-11 70.5 63 60.3
SGA_v2.0_scaffold111G31376 Striga asiatica HOM05D000467 ORTHO05D000379 7.9e-11 70.1 70 60.0
PSO063G6599 Papaver somniferum HOM05D000467 ORTHO05D000379 1.0e-10 69.7 63 63.5
PSO782G3091 Papaver somniferum HOM05D000467 ORTHO05D000379 1.0e-10 69.7 63 63.5
Migut.E01334 Erythranthe guttata HOM05D000467 ORTHO05D000379 1.4e-10 69.3 55 67.3
Lj8C324T3 Lonicera japonica HOM05D000467 ORTHO05D000379 2.3e-10 68.6 71 59.2
MD07G1306300 Malus domestica HOM05D000467 ORTHO05D000379 3.0e-10 68.2 65 58.5
ECA240G4263 Erigeron canadensis HOM05D000467 ORTHO05D000379 3.9e-10 67.8 64 56.2
HanXRQChr13g0413281 Helianthus annuus HOM05D000467 ORTHO05D000379 3.9e-10 67.8 64 57.8
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 3.9e-10 67.8 71 52.1
FvH4_7g33770 Fragaria vesca HOM05D000467 ORTHO05D000379 5.1e-10 67.4 63 57.1
FAN01G0799 Fragaria x ananassa HOM05D000467 ORTHO05D000379 5.1e-10 67.4 63 57.1
FAN10G0920 Fragaria x ananassa HOM05D000467 ORTHO05D000379 5.1e-10 67.4 63 57.1
FAN10G2077 Fragaria x ananassa HOM05D000467 ORTHO05D000379 5.1e-10 67.4 63 57.1
CiPaw.05G237400 Carya illinoinensis HOM05D000467 ORTHO05D000379 6.7e-10 67.0 62 54.8
MD01G1234100 Malus domestica HOM05D000467 ORTHO05D000379 6.7e-10 67.0 63 58.7
RcHm_v2.0_Chr1g0383911 Rosa chinensis HOM05D000467 ORTHO05D000379 8.8e-10 66.6 63 57.1
Prupe.2G324300 Prunus persica HOM05D000467 ORTHO05D000379 2.0e-09 65.5 63 57.1
PGR142G2654 Punica granatum HOM05D000467 ORTHO05D000379 2.0e-09 65.5 61 57.4
Cpa.g.sc39.58 Carica papaya HOM05D000467 ORTHO05D000379 4.3e-09 64.3 65 52.3
SGA_v2.0_scaffold144G35868 Striga asiatica HOM05D000467 ORTHO05D000379 4.3e-09 64.3 70 55.7
unitig_0.g2214 Utricularia gibba HOM05D000467 ORTHO05D000379 4.3e-09 64.3 71 50.7
FAN03G1070 Fragaria x ananassa HOM05D000467 ORTHO05D000379 5.7e-09 63.9 63 55.6
FAN03G2783 Fragaria x ananassa HOM05D000467 ORTHO05D000379 5.7e-09 63.9 63 55.6
Lsat_1_v5_gn_5_63740 Lactuca sativa HOM05D000467 ORTHO05D000379 8.2e-08 60.1 69 50.7
Glyma.13G158800 Glycine max HOM05D000467 ORTHO05D000379 1.4e-07 59.3 60 50.0
Glyma.17G112500 Glycine max HOM05D000467 ORTHO05D000379 1.4e-07 59.3 57 52.6
ClCG11G003240 Citrullus lanatus HOM05D000467 ORTHO05D000379 1.8e-07 58.9 57 52.6
Os08g0162100 Oryza sativa ssp. japonica HOM05D000467 ORTHO05D000379 2.4e-07 58.5 57 47.4
SalBow4G1833 Salvia bowleyana HOM05D000467 ORTHO05D000379 3.1e-07 58.2 61 52.5
VMungo1215G2052 Vigna mungo HOM05D000467 ORTHO05D000379 3.1e-07 58.2 57 52.6
Eucgr.C03255 Eucalyptus grandis HOM05D000467 ORTHO05D000379 4.1e-07 57.8 56 51.8
arahy.Tifrunner.gnm1.ann1.5V3X3X Arachis hypogaea HOM05D000467 ORTHO05D000379 5.3e-07 57.4 57 50.9
arahy.Tifrunner.gnm1.ann1.62YL11 Arachis hypogaea HOM05D000467 ORTHO05D000379 5.3e-07 57.4 57 50.9
CSS0037050 Camellia sinensis var. sinensis HOM05D000467 ORTHO05D000379 5.3e-07 57.4 36 75.0
MD02G1027700 Malus domestica HOM05D000467 ORTHO05D000379 5.3e-07 57.4 57 50.9
PSO210G1102 Papaver somniferum HOM05D000467 ORTHO05D000379 5.3e-07 57.4 62 51.6
Zm00001eb415530 Zea mays HOM05D000467 ORTHO05D000379 6.9e-07 57.0 46 56.5
MELO3C004461.2 Cucumis melo HOM05D000467 ORTHO05D000379 1.2e-06 56.2 53 52.8
CsaV3_2G003060 Cucumis sativus L. HOM05D000467 ORTHO05D000379 1.2e-06 56.2 53 52.8
Eucgr.C01349 Eucalyptus grandis HOM05D000467 ORTHO05D000379 1.2e-06 56.2 57 49.1
QL02p089572 Quercus lobata HOM05D000467 ORTHO05D000379 1.2e-06 56.2 57 49.1
TAR365G0494 Trochodendron aralioides HOM05D000467 ORTHO05D000379 1.2e-06 56.2 57 47.4
Sed0000012 Sechium edule HOM05D000467 ORTHO05D000379 1.5e-06 55.8 57 50.9
SEGI_24060 Sequoiadendron giganteum HOM05D000467 ORTHO05D000379 1.5e-06 55.8 57 52.6
ATR0724G022 Amborella trichopoda HOM05D000467 ORTHO05D000379 2.0e-06 55.5 63 49.2
TAR383G0745 Trochodendron aralioides HOM05D000467 ORTHO05D000379 2.0e-06 55.5 57 52.6
Aqoxy3G02078 Aquilegia oxysepala HOM05D000467 ORTHO05D000379 2.6e-06 55.1 63 55.6
CANSAT11G0351 Cannabis sativa HOM05D000467 ORTHO05D000379 2.6e-06 55.1 56 48.2
HanXRQChr04g0098071 Helianthus annuus HOM05D000467 ORTHO05D000379 2.6e-06 55.1 60 46.7
Lsat_1_v5_gn_1_31280 Lactuca sativa HOM05D000467 ORTHO05D000379 2.6e-06 55.1 60 45.0
Lj5A73G71 Lonicera japonica HOM05D000467 ORTHO05D000379 2.6e-06 55.1 61 47.5
Sed0016479 Sechium edule HOM05D000467 ORTHO05D000379 2.6e-06 55.1 34 67.6
SEGI_03878 Sequoiadendron giganteum HOM05D000467 ORTHO05D000379 2.6e-06 55.1 57 52.6
SEGI_11450 Sequoiadendron giganteum HOM05D000467 ORTHO05D000379 2.6e-06 55.1 64 48.4
Sc10g0008110 Simmondsia chinensis HOM05D000467 ORTHO05D000379 2.6e-06 55.1 60 46.7
Ciclev10007508m.g Citrus clementina HOM05D000467 ORTHO05D013642 3.4e-06 54.7 42 61.9
Eucgr.C03318 Eucalyptus grandis HOM05D000467 ORTHO05D000379 3.4e-06 54.7 56 48.2
Thhalv10012501m.g Eutrema salsugineum HOM05D000467 ORTHO05D000379 3.4e-06 54.7 49 55.1
Gohir.A08G223200 Gossypium hirsutum HOM05D000467 ORTHO05D000379 3.4e-06 54.7 46 60.9
Gohir.D08G243400 Gossypium hirsutum HOM05D000467 ORTHO05D000379 3.4e-06 54.7 46 60.9
Gorai.004G259300 Gossypium raimondii HOM05D000467 ORTHO05D000379 3.4e-06 54.7 46 60.9
Hma1.2p1_1144F.1_g261320 Hydrangea macrophylla HOM05D000467 ORTHO05D000379 3.4e-06 54.7 60 48.3
Manes.14G114900 Manihot esculenta HOM05D000467 ORTHO05D000379 3.4e-06 54.7 62 48.4
Prupe.7G247300 Prunus persica HOM05D000467 ORTHO05D000379 3.4e-06 54.7 57 49.1
Hund00517 Selenicereus undatus HOM05D000467 ORTHO05D000379 3.4e-06 54.7 60 48.3
TWI32G0888 Tripterygium wilfordii HOM05D000467 ORTHO05D000379 3.4e-06 54.7 63 46.0
TWI63G1573 Tripterygium wilfordii HOM05D000467 ORTHO05D000379 3.4e-06 54.7 52 51.9
Aqoxy7G03658 Aquilegia oxysepala HOM05D000467 ORTHO05D000379 4.5e-06 54.3 57 47.4
CiPaw.03G247100 Carya illinoinensis HOM05D000467 ORTHO05D000379 4.5e-06 54.3 57 47.4
Haze_25529 Corylus avellana HOM05D000467 ORTHO05D000379 4.5e-06 54.3 57 49.1
Haze_25531 Corylus avellana HOM05D000467 ORTHO05D000379 4.5e-06 54.3 57 49.1
Dinv38124 Davidia involucrata HOM05D000467 ORTHO05D000379 4.5e-06 54.3 60 48.3
Eucgr.C01343 Eucalyptus grandis HOM05D000467 ORTHO05D000379 4.5e-06 54.3 56 50.0
Eucgr.C01368 Eucalyptus grandis HOM05D000467 ORTHO05D000379 4.5e-06 54.3 56 50.0
FvH4_1g02730 Fragaria vesca HOM05D000467 ORTHO05D000379 4.5e-06 54.3 57 47.4
FAN19G1297 Fragaria x ananassa HOM05D000467 ORTHO05D000379 4.5e-06 54.3 57 47.4
FAN23G2054 Fragaria x ananassa HOM05D000467 ORTHO05D000379 4.5e-06 54.3 57 47.4
FAN26G0931 Fragaria x ananassa HOM05D000467 ORTHO05D000379 4.5e-06 54.3 57 47.4
Manes.06G056000 Manihot esculenta HOM05D000467 ORTHO05D000379 4.5e-06 54.3 60 46.7
PSO210G0606 Papaver somniferum HOM05D000467 ORTHO05D000379 4.5e-06 54.3 62 50.0
RcHm_v2.0_Chr2g0087841 Rosa chinensis HOM05D000467 ORTHO05D000379 4.5e-06 54.3 57 47.4
Actinidia21964 Actinidia chinensis HOM05D000467 ORTHO05D000379 5.9e-06 53.9 57 49.1
Cpa.g.sc187.9 Carica papaya HOM05D000467 ORTHO05D000379 5.9e-06 53.9 51 47.1
Eucgr.F03923 Eucalyptus grandis HOM05D000467 ORTHO05D000379 5.9e-06 53.9 62 48.4
Phvul.003G167500 Phaseolus vulgaris HOM05D000467 ORTHO05D000379 5.9e-06 53.9 57 50.9
Prupe.3G093100 Prunus persica HOM05D000467 ORTHO05D000379 5.9e-06 53.9 56 51.8
SEGI_23186 Sequoiadendron giganteum HOM05D000467 ORTHO05D000379 5.9e-06 53.9 57 49.1
MSTRG.22765 Avicennia marina HOM05D000467 ORTHO05D000379 7.7e-06 53.5 50 56.0
CSS0040263 Camellia sinensis var. sinensis HOM05D000467 ORTHO05D000379 7.7e-06 53.5 57 45.6
Dinv41487 Davidia involucrata HOM05D000467 ORTHO05D000379 7.7e-06 53.5 57 47.4
Eucgr.C01404 Eucalyptus grandis HOM05D000467 ORTHO05D000379 7.7e-06 53.5 56 48.2
FvH4_6g29170 Fragaria vesca HOM05D000467 ORTHO05D000379 7.7e-06 53.5 56 51.8
FAN05G5346 Fragaria x ananassa HOM05D000467 ORTHO05D000379 7.7e-06 53.5 56 51.8
FAN09G3819 Fragaria x ananassa HOM05D000467 ORTHO05D000379 7.7e-06 53.5 56 51.8
FAN14G5551 Fragaria x ananassa HOM05D000467 ORTHO05D000379 7.7e-06 53.5 56 51.8
Hma1.2p1_0497F.1_g166280 Hydrangea macrophylla HOM05D000467 ORTHO05D000379 7.7e-06 53.5 57 47.4
MD15G1169300 Malus domestica HOM05D000467 ORTHO05D000379 7.7e-06 53.5 57 49.1
Psat0s3887g0040 Pisum sativum HOM05D000467 ORTHO05D000379 7.7e-06 53.5 57 49.1
RcHm_v2.0_Chr2g0134371 Rosa chinensis HOM05D000467 ORTHO05D000379 7.7e-06 53.5 56 51.8
TAR626G1648 Trochodendron aralioides HOM05D000467 ORTHO05D000379 7.7e-06 53.5 58 48.3


User provided reference genes

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