Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.1e-98 361.7 172 100.0
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.2e-74 282.0 161 86.3
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 1.0e-72 276.9 158 82.9
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 2.8e-70 268.9 159 80.5
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 4.7e-70 268.1 159 79.2
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.4e-69 266.5 159 78.6
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 6.8e-69 264.2 159 75.5
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 8.9e-69 263.8 158 79.1
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 9.9e-68 260.4 158 77.2
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 1.3e-67 260.0 158 77.8
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 8.4e-67 257.3 159 75.5
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 1.4e-66 256.5 158 76.6
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 9.2e-66 253.8 157 76.4
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 2.3e-64 249.2 164 70.7
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 3.9e-64 248.4 161 73.3
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 3.9e-64 248.4 161 73.3
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 1.5e-63 246.5 158 70.9
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 2.5e-63 245.7 163 72.4
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.5e-63 245.7 165 71.5
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.5e-63 245.7 163 72.4
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 3.3e-63 245.4 161 72.7
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 7.3e-63 244.2 165 70.9
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 7.3e-63 244.2 165 70.9
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 7.3e-63 244.2 161 72.7
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 7.3e-63 244.2 163 72.4
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 7.3e-63 244.2 157 73.2
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 9.6e-63 243.8 157 74.5
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 1.6e-62 243.0 157 73.9
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 3.6e-62 241.9 164 68.9
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 4.7e-62 241.5 157 72.0
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 4.7e-62 241.5 157 72.0
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 8.1e-62 240.7 161 70.8
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 8.1e-62 240.7 158 71.5
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 1.1e-61 240.4 161 72.0
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 1.1e-61 240.4 161 69.6
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 1.4e-61 240.0 161 70.8
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 1.8e-61 239.6 161 68.3
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 3.1e-61 238.8 158 72.2
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 5.2e-61 238.0 161 68.3
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 5.2e-61 238.0 157 70.7
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 1.2e-60 236.9 158 72.2
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 1.2e-60 236.9 180 65.0
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 1.5e-60 236.5 158 70.9
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 5.8e-60 234.6 162 67.9
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 5.8e-60 234.6 162 67.9
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 1.3e-59 233.4 156 72.4
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 1.7e-59 233.0 161 67.7
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 1.7e-59 233.0 159 67.3
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 3.8e-59 231.9 161 66.5
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 3.8e-59 231.9 162 66.7
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 4.9e-59 231.5 161 66.5
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 6.4e-59 231.1 164 67.1
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 8.4e-59 230.7 163 67.5
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 1.1e-58 230.3 162 66.7
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 1.4e-58 229.9 161 68.3
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.9e-58 229.6 164 64.6
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 2.4e-58 229.2 161 67.7
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 3.2e-58 228.8 157 67.5
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 3.2e-58 228.8 155 68.4
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 4.2e-58 228.4 164 67.1
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 4.2e-58 228.4 161 64.0
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 5.4e-58 228.0 161 65.8
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 5.4e-58 228.0 160 66.9
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 7.1e-58 227.6 164 64.6
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 1.2e-57 226.9 156 68.6
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 1.2e-57 226.9 161 65.8
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 4.6e-57 224.9 159 69.2
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 4.6e-57 224.9 163 68.1
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 1.7e-56 223.0 161 64.0
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.7e-56 223.0 162 66.0
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.7e-56 223.0 162 66.0
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 2.3e-56 222.6 173 65.3
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 6.6e-56 221.1 164 66.5
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 8.7e-56 220.7 167 64.7
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 1.5e-55 219.9 164 61.6
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 1.5e-55 219.9 161 63.4
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 1.5e-55 219.9 161 63.4
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 1.5e-55 219.9 161 63.4
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 1.5e-55 219.9 157 65.6
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 3.3e-55 218.8 145 72.4
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 3.3e-55 218.8 161 63.4
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 3.3e-55 218.8 161 64.6
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 4.3e-55 218.4 158 65.2
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 4.3e-55 218.4 157 66.9
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 7.3e-55 217.6 145 72.4
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 7.3e-55 217.6 158 67.1
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 1.3e-54 216.9 168 63.7
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 1.3e-54 216.9 166 65.1
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 1.6e-54 216.5 157 66.2
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 1.6e-54 216.5 162 64.8
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 2.8e-54 215.7 161 62.7
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 2.8e-54 215.7 237 49.8
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 4.8e-54 214.9 162 63.6
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 8.1e-54 214.2 188 56.4
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 8.1e-54 214.2 164 61.0
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 3.1e-53 212.2 168 64.3
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 9.0e-53 210.7 157 63.7
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 1.2e-52 210.3 157 64.3
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 7.9e-49 197.6 155 60.6
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 6.7e-48 194.5 158 62.0
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 8.7e-48 194.1 145 64.1
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 1.9e-47 193.0 185 53.5
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.2e-43 179.5 103 80.6
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 8.4e-43 177.6 148 57.4
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 2.4e-37 159.5 158 48.7
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 1.2e-36 157.1 121 61.2
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 2.2e-35 152.9 159 50.9
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 2.9e-35 152.5 117 61.5
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 6.5e-35 151.4 123 60.2
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 3.2e-34 149.1 154 49.4
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 7.1e-34 147.9 118 61.0
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 4.6e-33 145.2 164 48.2
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 7.9e-33 144.4 155 49.0
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 1.0e-32 144.1 175 44.0
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 3.0e-32 142.5 155 48.4
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 3.9e-32 142.1 155 48.4
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 8.7e-32 141.0 162 44.4
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 4.8e-30 135.2 143 49.7
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.9e-26 123.2 62 90.3
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 4.6e-25 118.6 141 44.0
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 9.4e-18 94.4 85 52.9
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.1e-17 93.2 77 57.1
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 3.6e-17 92.4 77 57.1
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 7.9e-17 91.3 61 67.2
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 8.2e-14 81.3 55 67.3
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.4e-13 79.7 55 69.1
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 2.6e-12 76.3 190 24.7
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 7.7e-12 74.7 42 76.2
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 6.5e-11 71.6 155 28.4
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 7.2e-10 68.2 49 63.3
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 4.7e-09 65.5 49 65.3
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 1.0e-08 64.3 140 32.9
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 3.9e-08 62.4 34 76.5
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 4.4e-07 58.9 168 30.4


User provided reference genes

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