Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007769 Camellia sinensis var. sinensis HOM05D006204 ORTHO05D007851 3.4e-278 961.1 496 100.0
Rhsim13G0053400 Rhododendron simsii HOM05D006204 ORTHO05D007851 1.0e-210 736.9 494 77.1
Dinv10448 Davidia involucrata HOM05D006204 ORTHO05D007851 5.7e-209 731.1 493 76.1
Lj2C1115T10 Lonicera japonica HOM05D006204 ORTHO05D007851 9.5e-188 660.6 495 69.5
Cfa010629 Carpinus fangiana HOM05D006204 ORTHO05D007851 4.4e-185 651.7 494 69.0
Hma1.2p1_0161F.1_g071490 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 5.7e-185 651.4 466 71.5
vmacro02824 Vaccinium macrocarpon HOM05D006204 ORTHO05D007851 2.3e-181 639.4 500 69.0
CiPaw.13G058500 Carya illinoinensis HOM05D006204 ORTHO05D007851 1.6e-179 633.3 497 66.0
Lsat_1_v5_gn_8_97700 Lactuca sativa HOM05D006204 ORTHO05D007851 6.1e-179 631.3 491 66.2
QL09p047023 Quercus lobata HOM05D006204 ORTHO05D007851 1.8e-178 629.8 474 68.1
TWI36G0048 Tripterygium wilfordii HOM05D006204 ORTHO05D007851 1.5e-177 626.7 467 68.3
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 1.1e-175 620.5 423 73.0
Cc01_g16040 Coffea canephora HOM05D006204 ORTHO05D007851 7.0e-175 617.8 481 65.5
Manes.12G059400 Manihot esculenta HOM05D006204 ORTHO05D007851 5.9e-174 614.8 475 65.5
Prupe.8G189100 Prunus persica HOM05D006204 ORTHO05D007851 1.0e-173 614.0 493 62.7
Sopen09g021740 Solanum pennellii HOM05D006204 ORTHO05D007851 3.3e-172 609.0 494 65.2
Solyc09g055910.3 Solanum lycopersicum HOM05D006204 ORTHO05D007851 5.6e-172 608.2 494 65.6
Cpa.g.sc8.59 Carica papaya HOM05D006204 ORTHO05D007851 1.6e-171 606.7 477 63.7
Nitab4.5_0002518g0020 Nicotiana tabacum HOM05D006204 ORTHO05D007851 2.1e-171 606.3 460 66.5
Peaxi162Scf00672g00017 Petunia axillaris HOM05D006204 ORTHO05D007851 1.0e-170 604.0 460 67.0
Ciclev10015007m.g Citrus clementina HOM05D006204 ORTHO05D007851 1.4e-170 603.6 466 64.4
Haze_03572 Corylus avellana HOM05D006204 ORTHO05D007851 1.4e-170 603.6 564 59.4
CAN.G120.6 Capsicum annuum HOM05D006204 ORTHO05D007851 1.7e-168 596.7 490 63.3
Duzib211G0163 Durio zibethinus HOM05D006204 ORTHO05D007851 1.1e-167 594.0 498 62.0
Sabra14G0135500 Salix brachista HOM05D006204 ORTHO05D007851 1.9e-167 593.2 457 66.7
ECA236G0779 Erigeron canadensis HOM05D006204 ORTHO05D007851 7.0e-167 591.3 422 69.7
MSTRG.18500 Avicennia marina HOM05D006204 ORTHO05D007851 2.7e-166 589.3 496 63.9
PGR083G1941 Punica granatum HOM05D006204 ORTHO05D007851 6.0e-166 588.2 467 65.7
Oeu051516.1 Olea europaea HOM05D006204 ORTHO05D007851 7.8e-166 587.8 446 65.9
Potri.014G018300 Populus trichocarpa HOM05D006204 ORTHO05D007851 1.0e-165 587.4 463 65.7
SalBow6G6469 Salvia bowleyana HOM05D006204 ORTHO05D007851 6.6e-165 584.7 439 68.6
Gorai.007G160200 Gossypium raimondii HOM05D006204 ORTHO05D007851 1.6e-163 580.1 495 61.2
Thecc.01G209900 Theobroma cacao HOM05D006204 ORTHO05D007851 1.6e-163 580.1 496 61.1
Gohir.D11G149400 Gossypium hirsutum HOM05D006204 ORTHO05D007851 1.1e-162 577.4 495 61.0
Potri.014G177300 Populus trichocarpa HOM05D006204 ORTHO05D007851 1.8e-162 576.6 464 64.7
Prupe.8G189200 Prunus persica HOM05D006204 ORTHO05D007851 2.3e-162 576.2 430 65.8
Eucgr.H00714 Eucalyptus grandis HOM05D006204 ORTHO05D007851 1.2e-161 573.9 469 64.4
CsaV3_7G027170 Cucumis sativus L. HOM05D006204 ORTHO05D007851 2.0e-161 573.2 437 65.4
MD05G1157000 Malus domestica HOM05D006204 ORTHO05D007851 1.3e-160 570.5 478 61.9
Nitab4.5_0000038g0330 Nicotiana tabacum HOM05D006204 ORTHO05D007851 1.1e-159 567.4 405 69.9
RcHm_v2.0_Chr6g0282641 Rosa chinensis HOM05D006204 ORTHO05D007851 1.4e-159 567.0 464 62.3
BraA06t26832Z Brassica rapa HOM05D006204 ORTHO05D007851 2.4e-159 566.2 451 64.1
Migut.D00744 Erythranthe guttata HOM05D006204 ORTHO05D007851 2.4e-159 566.2 454 64.8
A06p39170 Brassica napus HOM05D006204 ORTHO05D007851 5.4e-159 565.1 423 66.7
BcaC06g30795 Brassica carinata HOM05D006204 ORTHO05D007851 1.6e-158 563.5 422 66.4
Gohir.A11G143100 Gossypium hirsutum HOM05D006204 ORTHO05D007851 2.1e-158 563.1 495 59.8
Sed0024966 Sechium edule HOM05D006204 ORTHO05D007851 4.6e-158 562.0 422 66.8
ClCG09G007900 Citrullus lanatus HOM05D006204 ORTHO05D007851 7.8e-158 561.2 439 64.2
SGA_v2.0_scaffold566G52950 Striga asiatica HOM05D006204 ORTHO05D007851 7.8e-158 561.2 438 65.3
HanXRQChr09g0257591 Helianthus annuus HOM05D006204 ORTHO05D007851 1.0e-157 560.8 462 64.1
PSO832G1370 Papaver somniferum HOM05D006204 ORTHO05D007851 1.7e-157 560.1 426 66.4
C07p39160 Brassica napus HOM05D006204 ORTHO05D007851 3.0e-157 559.3 423 65.7
PSO210G2735 Papaver somniferum HOM05D006204 ORTHO05D007851 6.6e-157 558.1 426 66.0
Sp2g18790 Schrenkiella parvula HOM05D006204 ORTHO05D007851 6.6e-157 558.1 448 61.8
FAN27G0099 Fragaria x ananassa HOM05D006204 ORTHO05D007851 2.5e-156 556.2 461 61.2
FvH4_2g17671 Fragaria vesca HOM05D006204 ORTHO05D007851 3.6e-155 552.4 461 60.7
Aa31sc661G10 Aethionema arabicum HOM05D006204 ORTHO05D007851 8.1e-155 551.2 428 63.8
AL8G21270 Arabidopsis lyrata HOM05D006204 ORTHO05D007851 8.1e-155 551.2 443 63.0
Thhalv10004189m.g Eutrema salsugineum HOM05D006204 ORTHO05D007851 1.4e-154 550.4 429 63.9
BolC7t44436H Brassica oleracea HOM05D006204 ORTHO05D007851 2.3e-154 549.7 437 63.6
Hund09476 Selenicereus undatus HOM05D006204 ORTHO05D007851 6.8e-154 548.1 441 63.3
Carub.0008s0801 Capsella rubella HOM05D006204 ORTHO05D007851 8.9e-154 547.7 469 59.7
HanXRQChr09g0257621 Helianthus annuus HOM05D006204 ORTHO05D007851 3.4e-153 545.8 462 63.0
Lalb_Chr19g0126211 Lupinus albus HOM05D006204 ORTHO05D007851 1.3e-152 543.9 426 63.1
Medtr7g051240 Medicago truncatula HOM05D006204 ORTHO05D007851 1.3e-152 543.9 459 60.8
Lj1g0017122 Lotus japonicus HOM05D006204 ORTHO05D007851 3.8e-152 542.3 458 60.5
AT5G48440 Arabidopsis thaliana HOM05D006204 ORTHO05D007851 1.1e-151 540.8 470 59.8
GSVIVG01003799001 Vitis vinifera HOM05D006204 ORTHO05D007851 2.4e-151 539.7 416 65.9
AUR62008077 Chenopodium quinoa HOM05D006204 ORTHO05D007851 4.1e-151 538.9 466 59.4
TPR.G26855 Trifolium pratense HOM05D006204 ORTHO05D007851 5.4e-151 538.5 463 59.4
Ah.02g111080 Amaranthus hybridus HOM05D006204 ORTHO05D007851 7.8e-150 534.6 488 55.9
Ca_07443_v3 Cicer arietinum L. HOM05D006204 ORTHO05D007851 1.5e-148 530.4 424 61.8
FAN15G1742 Fragaria x ananassa HOM05D006204 ORTHO05D007851 3.3e-148 529.3 472 57.6
Phvul.008G135100 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 9.6e-148 527.7 424 61.3
COL.COLO4_06929 Corchorus olitorius HOM05D006204 ORTHO05D007851 1.6e-147 526.9 493 57.2
Aqoxy2G00207 Aquilegia oxysepala HOM05D006204 ORTHO05D007851 6.9e-146 521.5 427 60.9
ATR0743G111 Amborella trichopoda HOM05D006204 ORTHO05D007851 8.9e-146 521.2 487 56.9
Glyma.08G343200 Glycine max HOM05D006204 ORTHO05D007851 2.0e-145 520.0 435 58.2
Phvul.008G135200 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 4.4e-145 518.8 419 60.6
EL10Ac5g10598 Beta vulgaris HOM05D006204 ORTHO05D007851 1.3e-144 517.3 478 56.9
DCAR_000507 Daucus carota HOM05D006204 ORTHO05D007851 2.2e-144 516.5 423 62.4
CARHR183670 Cardamine hirsuta HOM05D006204 ORTHO05D007851 1.4e-143 513.8 428 59.8
THA.LOC104802642 Tarenaya hassleriana HOM05D006204 ORTHO05D007851 2.4e-143 513.1 450 59.1
Psat3g151720 Pisum sativum HOM05D006204 ORTHO05D007851 9.3e-143 511.1 394 64.2
Nn1g09591 Nelumbo nucifera HOM05D006204 ORTHO05D007851 3.0e-141 506.1 371 67.1
MBI11_g40788_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 3.9e-141 505.8 374 67.1
Hund09342 Selenicereus undatus HOM05D006204 ORTHO05D007851 8.4e-136 488.0 421 58.7
unitig_736.g22899 Utricularia gibba HOM05D006204 ORTHO05D007851 7.9e-134 481.5 423 59.3
arahy.Tifrunner.gnm1.ann1.LI75FD Arachis hypogaea HOM05D006204 ORTHO05D007851 1.3e-133 480.7 497 52.5
VMungo1383G3498 Vigna mungo HOM05D006204 ORTHO05D007851 3.0e-133 479.6 405 59.0
TAR362G0101 Trochodendron aralioides HOM05D006204 ORTHO05D007851 1.1e-132 477.6 363 68.9
Zm00001eb318320 Zea mays HOM05D006204 ORTHO05D007851 1.9e-132 476.9 418 57.2
Sc17g0001620 Simmondsia chinensis HOM05D006204 ORTHO05D007851 1.1e-127 461.1 371 60.1
Actinidia30007 Actinidia chinensis HOM05D006204 ORTHO05D007851 1.3e-123 447.6 283 79.5
VMungo1383G1750 Vigna mungo HOM05D006204 ORTHO05D007851 7.6e-121 438.3 367 58.6
AUR62028656 Chenopodium quinoa HOM05D006204 ORTHO05D007851 3.8e-120 436.0 439 52.8
AUR62027071 Chenopodium quinoa HOM05D006204 ORTHO05D007851 5.7e-108 395.6 428 50.0
AUR62030912 Chenopodium quinoa HOM05D006204 ORTHO05D007851 3.1e-106 389.8 429 49.2
AagrBONN_evm.TU.Sc2ySwM_344.1300 Anthoceros agrestis HOM05D006204 ORTHO05D007851 7.2e-103 378.6 424 46.0
Pp3c13_24490 Physcomitrium patens HOM05D006204 ORTHO05D007851 6.9e-98 362.1 432 44.9
Hma1.2p1_0161F.1_g071500 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 7.2e-95 352.1 222 77.5
Mapoly0020s0122 Marchantia polymorpha HOM05D006204 ORTHO05D007851 6.7e-93 345.5 422 44.3
SMO364G0271 Selaginella moellendorffii HOM05D006204 ORTHO05D007851 7.2e-87 325.5 404 43.8
AUR62043643 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.2e-86 324.7 302 54.0
Ah.01g024240 Amaranthus hybridus HOM05D006204 ORTHO05D007851 2.2e-83 313.9 371 48.5
Haze_03570 Corylus avellana HOM05D006204 ORTHO05D007851 3.6e-78 296.6 305 55.1
Atru.chr6.3536 Acer truncatum HOM05D006204 ORTHO05D007851 2.3e-77 293.9 260 59.6
MELO3C015716.2 Cucumis melo HOM05D006204 ORTHO05D007851 1.6e-73 281.2 210 67.6
Actinidia27653 Actinidia chinensis HOM05D006204 ORTHO05D007851 7.5e-60 235.7 173 73.4
QL09p047008 Quercus lobata HOM05D006204 ORTHO05D007851 2.3e-56 224.2 455 36.3
SEGI_17774 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 1.4e-50 204.9 221 49.3
Cre07.g346800 Chlamydomonas reinhardtii HOM05D006204 ORTHO05D007851 7.0e-50 202.6 463 32.6
Cc10_g08090 Coffea canephora HOM05D006204 ORTHO05D007851 5.2e-37 159.8 156 56.4
MELO3C029187.2 Cucumis melo HOM05D006204 ORTHO05D007851 4.4e-36 156.8 101 73.3
HPP92_002747 Vanilla planifolia HOM05D006204 ORTHO05D007851 6.6e-32 142.9 116 60.3
Atru.chr6.3537 Acer truncatum HOM05D006204 ORTHO05D007851 1.2e-30 138.7 109 66.1
Psat0s4407g0040 Pisum sativum HOM05D006204 ORTHO05D007851 1.2e-30 138.7 112 58.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.1e-29 134.0 411 26.8
SEGI_39676 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 1.2e-28 132.1 143 46.2
Phvul.L001686 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.9e-23 114.8 87 64.4
SEGI_16048 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 9.3e-18 95.9 90 48.9
HPP92_002746 Vanilla planifolia HOM05D006204 ORTHO05D007851 5.3e-13 80.1 68 57.4
Psat7g213000 Pisum sativum HOM05D006204 ORTHO05D007851 9.0e-13 79.3 71 59.2
MBI11_g40786_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 4.5e-12 77.0 106 50.0
HPP92_002705 Vanilla planifolia HOM05D006204 ORTHO05D007851 1.7e-11 75.1 51 66.7
Os09g0514100 Oryza sativa ssp. japonica HOM05D006204 ORTHO05D007851 7.1e-10 69.7 53 71.7


User provided reference genes

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