Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 3.8e-93 344.7 164 100.0
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 1.5e-65 253.1 162 75.3
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 3.7e-64 248.4 163 74.2
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 3.1e-63 245.4 162 74.7
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 3.8e-61 238.4 161 70.8
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 8.5e-61 237.3 161 69.6
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 1.9e-60 236.1 161 67.7
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 2.5e-60 235.7 168 69.6
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 3.2e-60 235.3 164 67.1
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 9.4e-60 233.8 163 69.9
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 2.1e-59 232.6 166 71.1
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 3.6e-59 231.9 166 70.5
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 8.0e-59 230.7 168 69.0
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 8.0e-59 230.7 167 67.1
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 1.8e-58 229.6 167 65.9
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 4.0e-58 228.4 162 69.1
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 1.5e-57 226.5 165 68.5
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 2.6e-57 225.7 167 64.7
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 7.5e-57 224.2 193 61.1
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 3.7e-56 221.9 163 68.1
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 1.8e-55 219.5 163 68.1
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 1.8e-55 219.5 164 64.0
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 2.4e-55 219.2 161 65.8
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 7.0e-55 217.6 165 65.5
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 7.0e-55 217.6 162 68.5
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.2e-54 216.9 161 64.6
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 1.6e-54 216.5 161 68.3
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 2.7e-54 215.7 162 63.6
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 2.7e-54 215.7 168 65.5
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 4.5e-54 214.9 161 67.7
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 5.9e-54 214.5 163 65.0
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 7.7e-54 214.2 163 65.0
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 1.7e-53 213.0 165 66.1
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 2.9e-53 212.2 163 64.4
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 8.6e-53 210.7 136 75.0
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 8.6e-53 210.7 162 64.8
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 8.6e-53 210.7 164 64.6
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 1.9e-52 209.5 164 66.5
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 1.6e-51 206.5 162 62.3
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 2.8e-51 205.7 166 63.9
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 4.7e-51 204.9 164 65.9
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 6.1e-51 204.5 164 63.4
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 1.5e-49 199.9 163 60.7
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 2.0e-49 199.5 163 63.2
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 3.4e-49 198.7 141 71.6
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 9.8e-49 197.2 164 62.2
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 1.3e-48 196.8 164 61.0
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 1.3e-48 196.8 164 60.4
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 3.7e-48 195.3 154 63.6
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 4.9e-48 194.9 161 60.2
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 4.9e-48 194.9 164 60.4
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 1.4e-47 193.4 165 58.8
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 1.8e-47 193.0 136 69.1
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 2.0e-46 189.5 129 72.1
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 2.7e-46 189.1 136 67.6
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 5.9e-46 188.0 153 60.8
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 5.9e-46 188.0 145 64.1
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 5.9e-46 188.0 136 70.6
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 2.9e-45 185.7 186 55.9
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 1.1e-44 183.7 158 60.8
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 7.3e-44 181.0 161 55.9
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 3.6e-43 178.7 164 56.1
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 8.0e-43 177.6 131 67.9
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 8.0e-43 177.6 139 69.8
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 8.0e-43 177.6 166 54.8
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 1.8e-42 176.4 167 55.7
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 2.6e-41 172.6 178 48.9
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 4.4e-41 171.8 139 63.3
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 2.0e-38 162.9 132 66.7
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 1.6e-35 153.3 161 52.2
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 8.3e-32 141.0 94 63.8
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 3.2e-31 139.0 161 49.7
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 1.2e-30 137.1 80 70.0
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 2.7e-30 136.0 110 55.5
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 8.9e-26 120.9 80 63.8
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 2.9e-24 115.9 188 34.6
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 9.2e-23 110.9 181 34.8
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 2.7e-22 109.4 125 48.0
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 1.2e-17 94.0 73 64.4
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 2.9e-16 89.4 81 59.3
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 6.0e-06 55.1 90 32.2


User provided reference genes

Program Settings