Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007296 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 3.0e-47 191.4 91 100.0
CSS0031499 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 9.3e-25 116.7 64 84.4
FAN09G2795 Fragaria x ananassa HOM05D000702 ORTHO05D001396 9.3e-25 116.7 80 70.0
Cfa001883 Carpinus fangiana HOM05D000702 ORTHO05D001396 1.6e-21 105.9 89 55.1
GSVIVG01034237001 Vitis vinifera HOM05D000702 ORTHO05D001396 3.7e-21 104.8 60 80.0
Hma1.2p1_0109F.1_g052500 Hydrangea macrophylla HOM05D000702 ORTHO05D001396 8.2e-21 103.6 63 76.2
Prupe.3G097800 Prunus persica HOM05D000702 ORTHO05D001396 1.1e-20 103.2 62 75.8
Rhsim08G0206300 Rhododendron simsii HOM05D000702 ORTHO05D001396 1.8e-20 102.4 62 77.4
COL.COLO4_26683 Corchorus olitorius HOM05D000702 ORTHO05D001396 2.4e-20 102.1 62 74.2
Phvul.010G160800 Phaseolus vulgaris HOM05D000702 ORTHO05D001396 2.4e-20 102.1 63 74.6
Rhsim08G0206400 Rhododendron simsii HOM05D000702 ORTHO05D001396 3.1e-20 101.7 62 77.4
Rhsim08G0206800 Rhododendron simsii HOM05D000702 ORTHO05D001396 3.1e-20 101.7 62 77.4
Duzib192G0942 Durio zibethinus HOM05D000702 ORTHO05D001396 4.1e-20 101.3 62 74.2
Manes.11G066200 Manihot esculenta HOM05D000702 ORTHO05D001396 4.1e-20 101.3 63 74.6
TWI18G0402 Tripterygium wilfordii HOM05D000702 ORTHO05D001396 4.1e-20 101.3 62 75.8
FvH4_6g28670 Fragaria vesca HOM05D000702 ORTHO05D001396 5.3e-20 100.9 62 74.2
FAN02G2517 Fragaria x ananassa HOM05D000702 ORTHO05D001396 5.3e-20 100.9 62 74.2
FAN14G3698 Fragaria x ananassa HOM05D000702 ORTHO05D001396 5.3e-20 100.9 62 74.2
QL05p036400 Quercus lobata HOM05D000702 ORTHO05D001396 5.3e-20 100.9 62 74.2
Thecc.06G040700 Theobroma cacao HOM05D000702 ORTHO05D001396 5.3e-20 100.9 62 72.6
Atru.chr2.3916 Acer truncatum HOM05D000702 ORTHO05D001396 6.9e-20 100.5 61 78.7
Atru.chr2.3920 Acer truncatum HOM05D000702 ORTHO05D001396 6.9e-20 100.5 61 78.7
MD17G1222500 Malus domestica HOM05D000702 ORTHO05D001396 6.9e-20 100.5 63 73.0
Potri.001G044900 Populus trichocarpa HOM05D000702 ORTHO05D001396 6.9e-20 100.5 63 71.4
CiPaw.01G254300 Carya illinoinensis HOM05D000702 ORTHO05D001396 9.0e-20 100.1 62 75.8
FAN05G4195 Fragaria x ananassa HOM05D000702 ORTHO05D001396 1.2e-19 99.8 62 72.6
Glyma.13G369900 Glycine max HOM05D000702 ORTHO05D001396 1.2e-19 99.8 62 72.6
Haze_16663 Corylus avellana HOM05D000702 ORTHO05D001396 1.5e-19 99.4 63 69.8
Phvul.005G182000 Phaseolus vulgaris HOM05D000702 ORTHO05D001396 1.5e-19 99.4 62 72.6
Glyma.15G003500 Glycine max HOM05D000702 ORTHO05D001396 2.6e-19 98.6 62 71.0
Gohir.A05G119700 Gossypium hirsutum HOM05D000702 ORTHO05D001396 2.6e-19 98.6 62 71.0
Gohir.D05G120700 Gossypium hirsutum HOM05D000702 ORTHO05D001396 2.6e-19 98.6 62 71.0
Gorai.009G124200 Gossypium raimondii HOM05D000702 ORTHO05D001396 2.6e-19 98.6 62 71.0
VMungo0331G0743 Vigna mungo HOM05D000702 ORTHO05D001396 2.6e-19 98.6 63 71.4
VMungo1080G0533 Vigna mungo HOM05D000702 ORTHO05D001396 3.4e-19 98.2 62 69.4
Eucgr.J03115 Eucalyptus grandis HOM05D000702 ORTHO05D001396 4.5e-19 97.8 63 74.6
RcHm_v2.0_Chr2g0133071 Rosa chinensis HOM05D000702 ORTHO05D001396 4.5e-19 97.8 61 70.5
Lj9C493T9 Lonicera japonica HOM05D000702 ORTHO05D001396 7.6e-19 97.1 63 71.4
Solyc03g116900.3 Solanum lycopersicum HOM05D000702 ORTHO05D001396 7.6e-19 97.1 63 65.1
Sopen03g035830 Solanum pennellii HOM05D000702 ORTHO05D001396 7.6e-19 97.1 63 65.1
CAN.G407.63 Capsicum annuum HOM05D000702 ORTHO05D001396 1.0e-18 96.7 63 66.7
Ciclev10025318m.g Citrus clementina HOM05D000702 ORTHO05D001396 1.0e-18 96.7 64 73.4
Lj3g0000708 Lotus japonicus HOM05D000702 ORTHO05D001396 1.7e-18 95.9 63 68.3
Medtr2g104990 Medicago truncatula HOM05D000702 ORTHO05D001396 1.7e-18 95.9 62 67.7
Glyma.08G218200 Glycine max HOM05D000702 ORTHO05D001396 2.2e-18 95.5 64 71.9
Nn7g37713 Nelumbo nucifera HOM05D000702 ORTHO05D001396 2.2e-18 95.5 62 69.4
Psat5g305480 Pisum sativum HOM05D000702 ORTHO05D001396 2.2e-18 95.5 62 67.7
TAR626G1023 Trochodendron aralioides HOM05D000702 ORTHO05D001396 2.2e-18 95.5 60 71.7
vmacro19052 Vaccinium macrocarpon HOM05D000702 ORTHO05D001396 2.2e-18 95.5 63 74.6
MSTRG.4682 Avicennia marina HOM05D000702 ORTHO05D001396 3.8e-18 94.7 63 61.9
CsaV3_3G032470 Cucumis sativus L. HOM05D000702 ORTHO05D001396 3.8e-18 94.7 63 65.1
Manes.11G066100 Manihot esculenta HOM05D000702 ORTHO05D001396 3.8e-18 94.7 62 69.4
Ca_01019_v3 Cicer arietinum L. HOM05D000702 ORTHO05D001396 6.5e-18 94.0 60 68.3
ClCG10G012960 Citrullus lanatus HOM05D000702 ORTHO05D001396 6.5e-18 94.0 62 69.4
Sed0024662 Sechium edule HOM05D000702 ORTHO05D001396 6.5e-18 94.0 62 67.7
THA.LOC104812428 Tarenaya hassleriana HOM05D000702 ORTHO05D001396 6.5e-18 94.0 62 67.7
CsaV3_3G032820 Cucumis sativus L. HOM05D000702 ORTHO05D001396 1.1e-17 93.2 62 66.1
Glyma.07G023600 Glycine max HOM05D000702 ORTHO05D001396 1.1e-17 93.2 64 68.8
MSTRG.9402 Avicennia marina HOM05D000702 ORTHO05D001396 1.4e-17 92.8 62 62.9
Migut.D01123 Erythranthe guttata HOM05D000702 ORTHO05D001396 1.4e-17 92.8 64 60.9
Thhalv10018389m.g Eutrema salsugineum HOM05D000702 ORTHO05D001396 1.4e-17 92.8 64 67.2
arahy.Tifrunner.gnm1.ann1.84P9ED Arachis hypogaea HOM05D000702 ORTHO05D001396 1.9e-17 92.4 64 62.5
BcaB02g07246 Brassica carinata HOM05D000702 ORTHO05D001396 2.5e-17 92.0 65 64.6
BcaB05g25226 Brassica carinata HOM05D000702 ORTHO05D001396 2.5e-17 92.0 64 65.6
BcaC03g15928 Brassica carinata HOM05D000702 ORTHO05D001396 2.5e-17 92.0 64 65.6
A02p23130 Brassica napus HOM05D000702 ORTHO05D001396 2.5e-17 92.0 64 65.6
C02p36890 Brassica napus HOM05D000702 ORTHO05D001396 2.5e-17 92.0 64 65.6
BolC2t09702H Brassica oleracea HOM05D000702 ORTHO05D001396 2.5e-17 92.0 64 65.6
Sed0020297 Sechium edule HOM05D000702 ORTHO05D001396 2.5e-17 92.0 62 66.1
Nitab4.5_0004147g0050 Nicotiana tabacum HOM05D000702 ORTHO05D001396 3.2e-17 91.7 63 60.3
Peaxi162Scf00332g00512 Petunia axillaris HOM05D000702 ORTHO05D001396 3.2e-17 91.7 65 64.6
TPR.G19170 Trifolium pratense HOM05D000702 ORTHO05D001396 3.2e-17 91.7 64 67.2
BcaC08g45341 Brassica carinata HOM05D000702 ORTHO05D001396 5.5e-17 90.9 64 64.1
C06p29530 Brassica napus HOM05D000702 ORTHO05D001396 5.5e-17 90.9 64 64.1
BolC6t38121H Brassica oleracea HOM05D000702 ORTHO05D001396 5.5e-17 90.9 64 64.1
Sabra01G0031200 Salix brachista HOM05D000702 ORTHO05D001396 5.5e-17 90.9 75 60.0
Lj5A80T56 Lonicera japonica HOM05D000702 ORTHO05D001396 7.2e-17 90.5 65 64.6
Nitab4.5_0002568g0010 Nicotiana tabacum HOM05D000702 ORTHO05D001396 9.3e-17 90.1 63 58.7
BraA02t07311Z Brassica rapa HOM05D000702 ORTHO05D001396 1.2e-16 89.7 64 64.1
Lalb_Chr14g0374091 Lupinus albus HOM05D000702 ORTHO05D001396 1.2e-16 89.7 62 64.5
Cc04_g05050 Coffea canephora HOM05D000702 ORTHO05D001396 1.6e-16 89.4 60 66.7
A07p26880 Brassica napus HOM05D000702 ORTHO05D001396 2.7e-16 88.6 64 62.5
BraA07t30332Z Brassica rapa HOM05D000702 ORTHO05D001396 2.7e-16 88.6 64 62.5
arahy.Tifrunner.gnm1.ann1.BAME7Q Arachis hypogaea HOM05D000702 ORTHO05D001396 3.6e-16 88.2 60 66.7
arahy.Tifrunner.gnm1.ann1.DDDG3C Arachis hypogaea HOM05D000702 ORTHO05D001396 3.6e-16 88.2 60 66.7
CARHR073640 Cardamine hirsuta HOM05D000702 ORTHO05D001396 3.6e-16 88.2 61 65.6
Aa31LG4G1100 Aethionema arabicum HOM05D000702 ORTHO05D001396 6.1e-16 87.4 64 62.5
Sp5g34930 Schrenkiella parvula HOM05D000702 ORTHO05D001396 7.9e-16 87.0 63 63.5
Sc12g0008400 Simmondsia chinensis HOM05D000702 ORTHO05D001396 7.9e-16 87.0 63 61.9
Zm00001eb224770 Zea mays HOM05D000702 ORTHO05D001396 7.9e-16 87.0 65 61.5
CANSAT56G1384 Cannabis sativa HOM05D000702 ORTHO05D001396 1.0e-15 86.7 63 68.3
AT1G80830 Arabidopsis thaliana HOM05D000702 ORTHO05D001396 2.3e-15 85.5 63 63.5
Aa31LG7G540 Aethionema arabicum HOM05D000702 ORTHO05D001396 3.9e-15 84.7 64 60.9
Hund00437 Selenicereus undatus HOM05D000702 ORTHO05D001396 3.9e-15 84.7 70 57.1
Ah.01g024680 Amaranthus hybridus HOM05D000702 ORTHO05D001396 6.7e-15 84.0 68 57.4
DCAR_025566 Daucus carota HOM05D000702 ORTHO05D001396 8.8e-15 83.6 65 60.0
Thhalv10009815m.g Eutrema salsugineum HOM05D000702 ORTHO05D001396 8.8e-15 83.6 55 69.1
AL1G28120 Arabidopsis lyrata HOM05D000702 ORTHO05D001396 1.1e-14 83.2 52 69.2
Os06g0676000 Oryza sativa ssp. japonica HOM05D000702 ORTHO05D001396 1.1e-14 83.2 65 58.5
Dinv21410 Davidia involucrata HOM05D000702 ORTHO05D001396 1.5e-14 82.8 47 78.7
EL10Ac9g22211 Beta vulgaris HOM05D000702 ORTHO05D001396 1.9e-14 82.4 68 58.8
Hund06522 Selenicereus undatus HOM05D000702 ORTHO05D001396 1.9e-14 82.4 70 55.7
AT1G15960 Arabidopsis thaliana HOM05D000702 ORTHO05D001396 3.3e-14 81.6 55 65.5
HPP92_026345 Vanilla planifolia HOM05D000702 ORTHO05D001396 3.3e-14 81.6 65 58.5
Carub.0002s2672 Capsella rubella HOM05D000702 ORTHO05D001396 2.2e-13 79.0 64 60.9
Sp1g14270 Schrenkiella parvula HOM05D000702 ORTHO05D001396 2.8e-13 78.6 49 67.3
Carub.0001s1576 Capsella rubella HOM05D000702 ORTHO05D001396 1.4e-12 76.3 52 59.6
unitig_62.g23826 Utricularia gibba HOM05D000702 ORTHO05D001396 1.8e-12 75.9 58 53.4
HPP92_004180 Vanilla planifolia HOM05D000702 ORTHO05D001396 1.8e-12 75.9 65 55.4
AL2G40560 Arabidopsis lyrata HOM05D000702 ORTHO05D001396 3.1e-12 75.1 62 56.5
BolC6t40383H Brassica oleracea HOM05D000702 ORTHO05D001396 6.9e-12 73.9 59 55.9
HanXRQChr07g0200621 Helianthus annuus HOM05D000702 ORTHO05D001396 9.1e-12 73.6 47 66.0
Lsat_1_v5_gn_4_87161 Lactuca sativa HOM05D000702 ORTHO05D001396 9.1e-12 73.6 55 60.0
BcaC08g47541 Brassica carinata HOM05D000702 ORTHO05D001396 2.0e-11 72.4 59 54.2
A07p44850 Brassica napus HOM05D000702 ORTHO05D001396 2.0e-11 72.4 59 54.2
C06p53660 Brassica napus HOM05D000702 ORTHO05D001396 2.0e-11 72.4 59 54.2
BraA07t31992Z Brassica rapa HOM05D000702 ORTHO05D001396 2.0e-11 72.4 59 54.2
AUR62030834 Chenopodium quinoa HOM05D000702 ORTHO05D001396 2.0e-11 72.4 70 50.0
ECA232G4115 Erigeron canadensis HOM05D000702 ORTHO05D001396 1.0e-10 70.1 58 60.3
BolC5t30149H Brassica oleracea HOM05D000702 ORTHO05D001396 5.0e-10 67.8 55 56.4
BcaB02g08719 Brassica carinata HOM05D000702 ORTHO05D001396 8.5e-10 67.0 59 49.2
PSO675G4500 Papaver somniferum HOM05D000702 ORTHO05D001396 1.1e-09 66.6 47 63.8
SEGI_16962 Sequoiadendron giganteum HOM05D000702 ORTHO05D001396 1.1e-09 66.6 37 67.6
BcaC05g25615 Brassica carinata HOM05D000702 ORTHO05D001396 3.2e-09 65.1 54 55.6
C05p14180 Brassica napus HOM05D000702 ORTHO05D001396 3.2e-09 65.1 54 55.6
BraA06t24369Z Brassica rapa HOM05D000702 ORTHO05D001396 4.2e-09 64.7 56 51.8
A06p11980 Brassica napus HOM05D000702 ORTHO05D001396 2.1e-08 62.4 57 54.4
AagrBONN_evm.TU.Sc2ySwM_228.3280 Anthoceros agrestis HOM05D000702 ORTHO05D001396 4.7e-08 61.2 66 45.5
Mapoly0003s0129 Marchantia polymorpha HOM05D000702 ORTHO05D001396 6.1e-08 60.8 33 66.7
PGR031G2973 Punica granatum HOM05D000702 ORTHO05D001396 6.1e-08 60.8 30 80.0
Rhsim08G0206700 Rhododendron simsii HOM05D000702 ORTHO05D001396 1.0e-07 60.1 29 82.8
GSVIVG01008829001 Vitis vinifera HOM05D000702 ORTHO05D001396 3.9e-07 58.2 37 59.5
Oeu004330.1 Olea europaea HOM05D000702 ORTHO05D001396 5.1e-07 57.8 29 75.9
ATR1098G063 Amborella trichopoda HOM05D000702 ORTHO05D001396 6.7e-07 57.4 29 72.4
Nitab4.5_0000111g0130 Nicotiana tabacum HOM05D000702 ORTHO05D001396 6.7e-07 57.4 31 67.7
Nitab4.5_0005499g0010 Nicotiana tabacum HOM05D000702 ORTHO05D001396 6.7e-07 57.4 31 67.7
AUR62026994 Chenopodium quinoa HOM05D000702 ORTHO05D001396 8.8e-07 57.0 29 72.4
Solyc11g018530.2 Solanum lycopersicum HOM05D000702 ORTHO05D001396 2.0e-06 55.8 37 56.8
Sopen11g009480 Solanum pennellii HOM05D000702 ORTHO05D001396 2.0e-06 55.8 37 56.8
PGSC0003DMG400009247 Solanum tuberosum HOM05D000702 ORTHO05D001396 2.0e-06 55.8 37 56.8
DCAR_014378 Daucus carota HOM05D000702 ORTHO05D001396 2.6e-06 55.5 64 42.2
SEGI_04682 Sequoiadendron giganteum HOM05D000702 ORTHO05D001396 2.6e-06 55.5 29 72.4
SEGI_06725 Sequoiadendron giganteum HOM05D000702 ORTHO05D001396 2.6e-06 55.5 29 72.4
CSS0046206 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 4.4e-06 54.7 38 52.6
ECA246G1119 Erigeron canadensis HOM05D000702 ORTHO05D001396 4.4e-06 54.7 37 62.2
CAN.G1347.1 Capsicum annuum HOM05D000702 ORTHO05D001396 5.7e-06 54.3 29 69.0
CAN.G1391.1 Capsicum annuum HOM05D000702 ORTHO05D001396 5.7e-06 54.3 29 69.0
Hma1.2p1_1765F.1_g301450 Hydrangea macrophylla HOM05D000702 ORTHO05D001396 7.4e-06 53.9 46 52.2
Oeu021880.1 Olea europaea HOM05D000702 ORTHO05D001396 7.4e-06 53.9 65 46.2
SMO146G0080 Selaginella moellendorffii HOM05D000702 ORTHO05D001396 7.4e-06 53.9 42 50.0
Oeu059455.1 Olea europaea HOM05D000702 ORTHO05D001396 9.7e-06 53.5 35 60.0
PSO478G4966 Papaver somniferum HOM05D000702 ORTHO05D001396 9.7e-06 53.5 36 55.6
SGA_v2.0_scaffold52G18935 Striga asiatica HOM05D000702 ORTHO05D001396 9.7e-06 53.5 32 62.5


User provided reference genes

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