Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007186 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D000999 4.9e-94 347.8 179 100.0
Rhsim05G0000800 Rhododendron simsii HOM05D000528 ORTHO05D000999 5.1e-75 284.6 176 84.7
Rhsim02G0256800 Rhododendron simsii HOM05D000528 ORTHO05D000999 1.5e-74 283.1 178 83.1
Actinidia39603 Actinidia chinensis HOM05D000528 ORTHO05D000999 1.0e-67 260.4 209 68.9
Dinv25491 Davidia involucrata HOM05D000528 ORTHO05D000999 1.3e-67 260.0 209 69.4
vmacro06378 Vaccinium macrocarpon HOM05D000528 ORTHO05D000999 8.7e-67 257.3 216 65.7
Dinv42440 Davidia involucrata HOM05D000528 ORTHO05D000999 1.3e-62 243.4 210 65.7
Hma1.2p1_0179F.1_g079080 Hydrangea macrophylla HOM05D000528 ORTHO05D000999 2.1e-60 236.1 158 77.2
Sabra06G0167300 Salix brachista HOM05D000528 ORTHO05D000999 6.7e-59 231.1 210 61.4
Potri.006G216900 Populus trichocarpa HOM05D000528 ORTHO05D000999 8.7e-59 230.7 210 61.4
Ciclev10007246m.g Citrus clementina HOM05D000528 ORTHO05D000999 4.3e-58 228.4 209 62.7
Duzib150G1295 Durio zibethinus HOM05D000528 ORTHO05D000999 9.6e-58 227.3 210 60.5
Nn6g31501 Nelumbo nucifera HOM05D000528 ORTHO05D000999 1.1e-56 223.8 209 60.3
Manes.03G054900 Manihot esculenta HOM05D000528 ORTHO05D000999 1.8e-56 223.0 209 59.8
TAR626G1794 Trochodendron aralioides HOM05D000528 ORTHO05D000999 2.4e-56 222.6 210 58.6
Gorai.009G039300 Gossypium raimondii HOM05D000528 ORTHO05D000999 3.1e-56 222.2 210 59.0
Cc09_g04400 Coffea canephora HOM05D000528 ORTHO05D000999 1.2e-55 220.3 209 58.9
Gohir.A05G037300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 4.5e-55 218.4 210 58.1
Gohir.D05G038800 Gossypium hirsutum HOM05D000528 ORTHO05D000999 5.8e-55 218.0 210 57.6
Thecc.09G067600 Theobroma cacao HOM05D000528 ORTHO05D000999 5.8e-55 218.0 210 60.0
Aqoxy6G02695 Aquilegia oxysepala HOM05D000528 ORTHO05D000999 1.0e-54 217.2 209 57.9
PSO017G2681 Papaver somniferum HOM05D000528 ORTHO05D000999 2.9e-54 215.7 209 57.9
PSO170G1988 Papaver somniferum HOM05D000528 ORTHO05D000999 2.9e-54 215.7 209 58.4
Prupe.7G189500 Prunus persica HOM05D000528 ORTHO05D000999 5.0e-54 214.9 209 60.3
EL10Ac9g21127 Beta vulgaris HOM05D000528 ORTHO05D000999 6.5e-54 214.5 216 55.6
Manes.16G088500 Manihot esculenta HOM05D000528 ORTHO05D000999 6.5e-54 214.5 210 57.6
GSVIVG01014993001 Vitis vinifera HOM05D000528 ORTHO05D000999 1.4e-53 213.4 209 57.4
AUR62038332 Chenopodium quinoa HOM05D000528 ORTHO05D000999 1.6e-52 209.9 210 55.2
Lalb_Chr12g0200411 Lupinus albus HOM05D000528 ORTHO05D000999 2.1e-52 209.5 210 59.5
COL.COLO4_21179 Corchorus olitorius HOM05D000528 ORTHO05D000999 2.7e-52 209.1 209 57.9
Oeu007685.1 Olea europaea HOM05D000528 ORTHO05D000999 3.5e-52 208.8 159 69.2
Solyc12g017830.3 Solanum lycopersicum HOM05D000528 ORTHO05D000999 3.5e-52 208.8 217 56.2
Cfa021584 Carpinus fangiana HOM05D000528 ORTHO05D000999 4.6e-52 208.4 209 57.9
MBI13_g05971_MAGBIO Magnolia biondii HOM05D000528 ORTHO05D000999 6.1e-52 208.0 209 55.0
Eucgr.C00756 Eucalyptus grandis HOM05D000528 ORTHO05D000999 3.9e-51 205.3 209 58.9
TWI63G0826 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 3.9e-51 205.3 210 54.3
Sopen12g008630 Solanum pennellii HOM05D000528 ORTHO05D000999 5.1e-51 204.9 217 54.8
Gohir.A07G018300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 6.7e-51 204.5 209 55.5
TPR.G12643 Trifolium pratense HOM05D000528 ORTHO05D000999 6.7e-51 204.5 210 57.1
CANSAT56G4237 Cannabis sativa HOM05D000528 ORTHO05D000999 8.7e-51 204.1 209 57.9
TWI34G0978 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 8.7e-51 204.1 210 55.2
Gohir.D07G018100 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.1e-50 203.8 209 55.5
Sc03g0004600 Simmondsia chinensis HOM05D000528 ORTHO05D000999 1.9e-50 203.0 209 57.9
ATR0006G069 Amborella trichopoda HOM05D000528 ORTHO05D000999 2.5e-50 202.6 209 54.1
Gorai.001G018700 Gossypium raimondii HOM05D000528 ORTHO05D000999 3.3e-50 202.2 209 55.0
Nitab4.5_0006028g0020 Nicotiana tabacum HOM05D000528 ORTHO05D000999 3.3e-50 202.2 165 66.1
DCAR_027484 Daucus carota HOM05D000528 ORTHO05D000999 5.7e-50 201.4 209 53.1
MD02G1105600 Malus domestica HOM05D000528 ORTHO05D000999 5.7e-50 201.4 209 56.9
Lalb_Chr07g0181491 Lupinus albus HOM05D000528 ORTHO05D000999 7.4e-50 201.1 210 56.7
Ca_21350_v3 Cicer arietinum L. HOM05D000528 ORTHO05D000999 2.2e-49 199.5 210 57.1
Lj4g0008783 Lotus japonicus HOM05D000528 ORTHO05D000999 2.2e-49 199.5 209 56.5
Nitab4.5_0000219g0110 Nicotiana tabacum HOM05D000528 ORTHO05D000999 2.8e-49 199.1 165 66.7
SGA_v2.0_scaffold13G06349 Striga asiatica HOM05D000528 ORTHO05D000999 2.8e-49 199.1 209 54.1
AUR62023914 Chenopodium quinoa HOM05D000528 ORTHO05D000999 6.3e-49 198.0 160 62.5
FAN28G2848 Fragaria x ananassa HOM05D000528 ORTHO05D000999 6.3e-49 198.0 209 56.5
Glyma.13G115800 Glycine max HOM05D000528 ORTHO05D000999 6.3e-49 198.0 210 57.1
BcaB02g10779 Brassica carinata HOM05D000528 ORTHO05D000999 8.2e-49 197.6 209 54.5
MD15G1225500 Malus domestica HOM05D000528 ORTHO05D000999 8.2e-49 197.6 211 56.4
FvH4_1g09670 Fragaria vesca HOM05D000528 ORTHO05D000999 1.1e-48 197.2 209 56.0
FAN19G1221 Fragaria x ananassa HOM05D000528 ORTHO05D000999 1.1e-48 197.2 209 56.0
FAN26G1955 Fragaria x ananassa HOM05D000528 ORTHO05D000999 1.1e-48 197.2 209 56.0
FAN26G3208 Fragaria x ananassa HOM05D000528 ORTHO05D000999 1.1e-48 197.2 209 56.0
RcHm_v2.0_Chr2g0096511 Rosa chinensis HOM05D000528 ORTHO05D000999 1.4e-48 196.8 209 56.0
VMungo1215G1674 Vigna mungo HOM05D000528 ORTHO05D000999 1.4e-48 196.8 214 55.1
ECA234G2762 Erigeron canadensis HOM05D000528 ORTHO05D000999 1.8e-48 196.4 209 53.6
HanXRQChr16g0521011 Helianthus annuus HOM05D000528 ORTHO05D000999 1.8e-48 196.4 209 54.5
Hund00753 Selenicereus undatus HOM05D000528 ORTHO05D000999 1.8e-48 196.4 159 63.5
CAN.G8.14 Capsicum annuum HOM05D000528 ORTHO05D000999 2.4e-48 196.1 165 64.2
Glyma.17G044000 Glycine max HOM05D000528 ORTHO05D000999 3.1e-48 195.7 210 56.7
Phvul.003G126000 Phaseolus vulgaris HOM05D000528 ORTHO05D000999 4.1e-48 195.3 209 55.5
Peaxi162Scf00006g03411 Petunia axillaris HOM05D000528 ORTHO05D000999 5.3e-48 194.9 159 65.4
MSTRG.27425 Avicennia marina HOM05D000528 ORTHO05D000999 6.9e-48 194.5 208 54.8
SalBow3G2418 Salvia bowleyana HOM05D000528 ORTHO05D000999 6.9e-48 194.5 209 54.1
PGR142G1496 Punica granatum HOM05D000528 ORTHO05D000999 9.0e-48 194.1 209 56.5
MSTRG.8180 Avicennia marina HOM05D000528 ORTHO05D000999 1.2e-47 193.7 211 53.1
Migut.F01825 Erythranthe guttata HOM05D000528 ORTHO05D000999 1.2e-47 193.7 209 56.0
Sp5g17840 Schrenkiella parvula HOM05D000528 ORTHO05D000999 1.2e-47 193.7 209 54.1
DCAR_023798 Daucus carota HOM05D000528 ORTHO05D000999 2.0e-47 193.0 159 66.0
Thhalv10002369m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 2.0e-47 193.0 209 55.5
Carub.0005s0916 Capsella rubella HOM05D000528 ORTHO05D000999 2.6e-47 192.6 209 54.1
CiPaw.08G000100 Carya illinoinensis HOM05D000528 ORTHO05D000999 2.6e-47 192.6 211 58.8
Lsat_1_v5_gn_4_40140 Lactuca sativa HOM05D000528 ORTHO05D000999 2.6e-47 192.6 211 54.0
arahy.Tifrunner.gnm1.ann1.JF9XSQ Arachis hypogaea HOM05D000528 ORTHO05D000999 3.4e-47 192.2 209 54.5
arahy.Tifrunner.gnm1.ann1.Z2MV1Y Arachis hypogaea HOM05D000528 ORTHO05D000999 3.4e-47 192.2 209 54.5
AL5G21370 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 7.7e-47 191.0 209 53.6
BcaC01g02206 Brassica carinata HOM05D000528 ORTHO05D000999 7.7e-47 191.0 209 54.1
CDE06G2617 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 1.0e-46 190.7 209 54.1
HanXRQChr01g0017721 Helianthus annuus HOM05D000528 ORTHO05D000999 1.7e-46 189.9 209 53.1
CARHR153370 Cardamine hirsuta HOM05D000528 ORTHO05D000999 2.9e-46 189.1 209 54.1
Os07g0564700 Oryza sativa ssp. japonica HOM05D000528 ORTHO05D000999 3.8e-46 188.7 209 51.7
AT3G43300 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 5.0e-46 188.3 209 52.6
Psat4g020000 Pisum sativum HOM05D000528 ORTHO05D000999 5.0e-46 188.3 217 52.5
C03p67850 Brassica napus HOM05D000528 ORTHO05D000999 6.5e-46 188.0 217 52.1
BolSC21t60253H Brassica oleracea HOM05D000528 ORTHO05D000999 6.5e-46 188.0 217 52.1
Sed0018294 Sechium edule HOM05D000528 ORTHO05D000999 8.5e-46 187.6 210 51.9
ClCG05G002580 Citrullus lanatus HOM05D000528 ORTHO05D000999 1.1e-45 187.2 212 53.3
CsaV3_3G010020 Cucumis sativus L. HOM05D000528 ORTHO05D000999 1.1e-45 187.2 210 52.9
Medtr4g124430 Medicago truncatula HOM05D000528 ORTHO05D000999 1.4e-45 186.8 209 52.6
SalBow1G1474 Salvia bowleyana HOM05D000528 ORTHO05D000999 1.4e-45 186.8 209 52.6
Aa31LG4G12930 Aethionema arabicum HOM05D000528 ORTHO05D000999 2.5e-45 186.0 159 61.6
Zm00001eb107040 Zea mays HOM05D000528 ORTHO05D000999 2.5e-45 186.0 209 51.2
A06p26630 Brassica napus HOM05D000528 ORTHO05D000999 1.2e-44 183.7 217 51.6
BraA06t25597Z Brassica rapa HOM05D000528 ORTHO05D000999 3.6e-44 182.2 221 50.7
THA.LOC104799601 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 7.9e-44 181.0 209 50.2
Sed0012879 Sechium edule HOM05D000528 ORTHO05D000999 1.8e-43 179.9 209 51.2
HPP92_012349 Vanilla planifolia HOM05D000528 ORTHO05D000999 3.9e-43 178.7 211 50.7
CDE07G1894 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 5.1e-43 178.3 173 55.5
THA.LOC104810976 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 4.3e-42 175.3 209 50.2
unitig_736.g22501 Utricularia gibba HOM05D000528 ORTHO05D000999 4.3e-42 175.3 209 48.8
ECA248G1999 Erigeron canadensis HOM05D000528 ORTHO05D000999 2.2e-41 172.9 241 44.8
SGA_v2.0_scaffold122G33228 Striga asiatica HOM05D000528 ORTHO05D000999 1.0e-38 164.1 223 47.5
Lsat_1_v5_gn_1_84121 Lactuca sativa HOM05D000528 ORTHO05D000999 1.7e-38 163.3 242 43.4
unitig_699.g19739 Utricularia gibba HOM05D000528 ORTHO05D000999 4.2e-37 158.7 209 46.9
Lj1A1154G40 Lonicera japonica HOM05D000528 ORTHO05D000999 4.7e-36 155.2 163 57.7
Atru.chr7.1801 Acer truncatum HOM05D000528 ORTHO05D000999 1.1e-34 150.6 170 53.5
Actinidia33512 Actinidia chinensis HOM05D000528 ORTHO05D000999 4.1e-32 142.1 152 58.6
Pp3c21_12020 Physcomitrium patens HOM05D000528 ORTHO05D000999 3.2e-29 132.5 209 39.2
Pp3c18_8720 Physcomitrium patens HOM05D000528 ORTHO05D000999 4.7e-28 128.6 209 39.2
Pp3c18_8730 Physcomitrium patens HOM05D000528 ORTHO05D000999 4.7e-28 128.6 209 39.2
Mapoly0003s0171 Marchantia polymorpha HOM05D000528 ORTHO05D000999 1.8e-27 126.7 211 38.9
FAN23G1603 Fragaria x ananassa HOM05D000528 ORTHO05D000999 4.4e-26 122.1 159 47.2
MELO3C006224.2 Cucumis melo HOM05D000528 ORTHO05D000999 1.4e-24 117.1 82 73.2
Migut.F02072 Erythranthe guttata HOM05D000528 ORTHO05D000999 1.4e-24 117.1 116 55.2
Pp3c18_8290 Physcomitrium patens HOM05D000528 ORTHO05D000999 5.3e-24 115.2 209 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2707 Anthoceros agrestis HOM05D000528 ORTHO05D000999 1.2e-23 114.0 218 36.2
AagrBONN_evm.TU.Sc2ySwM_117.2712 Anthoceros agrestis HOM05D000528 ORTHO05D000999 1.2e-23 114.0 218 36.2
SalBow1G0700 Salvia bowleyana HOM05D000528 ORTHO05D000999 1.2e-23 114.0 151 46.4
Pp3c8_19790 Physcomitrium patens HOM05D000528 ORTHO05D000999 1.1e-21 107.5 211 36.0
CBR_g5727 Chara braunii HOM05D000528 ORTHO05D000999 1.1e-16 90.9 209 29.7
Cpa.g.sc82.37 Carica papaya HOM05D000528 ORTHO05D000999 3.8e-14 82.4 47 80.9
Pp3c5_16650 Physcomitrium patens HOM05D000528 ORTHO05D000999 2.0e-10 70.1 150 33.3


User provided reference genes

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