Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.5e-27 125.6 66 100.0
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.5e-27 125.6 66 100.0
CSS0042870 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 3.6e-18 94.4 69 79.7
CSS0042990 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 3.0e-17 91.3 67 79.1
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 3.1e-14 81.3 57 77.2
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 2.0e-13 78.6 57 75.4
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 2.7e-13 78.2 57 75.4
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 3.5e-13 77.8 57 73.7
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 3.5e-13 77.8 57 73.7
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 4.5e-13 77.4 57 73.7
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 4.5e-13 77.4 57 71.9
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 4.5e-13 77.4 57 71.9
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 4.5e-13 77.4 57 71.9
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 5.9e-13 77.0 57 70.2
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 7.8e-13 76.6 57 70.2
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 7.8e-13 76.6 57 73.7
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.0e-12 76.3 57 73.7
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 1.0e-12 76.3 57 71.9
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.3e-12 75.9 57 73.7
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 1.3e-12 75.9 57 68.4
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 1.3e-12 75.9 57 70.2
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 1.7e-12 75.5 57 70.2
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 1.7e-12 75.5 57 68.4
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.7e-12 75.5 57 70.2
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 1.7e-12 75.5 57 71.9
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 1.7e-12 75.5 57 71.9
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.7e-12 75.5 57 66.7
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 1.7e-12 75.5 57 71.9
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.3e-12 75.1 57 71.9
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 2.9e-12 74.7 57 70.2
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 2.9e-12 74.7 57 71.9
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 2.9e-12 74.7 57 68.4
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 2.9e-12 74.7 57 68.4
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 2.9e-12 74.7 57 68.4
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 2.9e-12 74.7 57 70.2
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 3.9e-12 74.3 57 71.9
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 3.9e-12 74.3 57 68.4
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 3.9e-12 74.3 57 66.7
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 3.9e-12 74.3 57 71.9
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 3.9e-12 74.3 57 70.2
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 5.0e-12 73.9 57 70.2
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 5.0e-12 73.9 57 70.2
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 5.0e-12 73.9 57 70.2
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 5.0e-12 73.9 57 70.2
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 6.6e-12 73.6 57 66.7
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 6.6e-12 73.6 57 71.9
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 6.6e-12 73.6 57 68.4
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 8.6e-12 73.2 57 68.4
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 8.6e-12 73.2 57 68.4
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.1e-11 72.8 57 68.4
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.1e-11 72.8 57 68.4
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.1e-11 72.8 57 68.4
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 1.1e-11 72.8 57 70.2
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 1.1e-11 72.8 57 70.2
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 66.7
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 66.7
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 68.4
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 68.4
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 68.4
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 68.4
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 68.4
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 68.4
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 70.2
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 70.2
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 66.7
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 66.7
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 70.2
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.5e-11 72.4 57 70.2
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 1.9e-11 72.0 57 64.9
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 1.9e-11 72.0 57 68.4
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.9e-11 72.0 57 68.4
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 1.9e-11 72.0 57 68.4
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 2.5e-11 71.6 57 68.4
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 2.5e-11 71.6 57 68.4
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 2.5e-11 71.6 57 64.9
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 2.5e-11 71.6 57 66.7
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 3.3e-11 71.2 57 66.7
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 4.3e-11 70.9 57 64.9
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 4.3e-11 70.9 57 64.9
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 5.6e-11 70.5 57 64.9
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 5.6e-11 70.5 57 66.7
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 7.3e-11 70.1 57 66.7
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 7.3e-11 70.1 57 66.7
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 7.3e-11 70.1 57 64.9
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 7.3e-11 70.1 57 66.7
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 9.5e-11 69.7 57 64.9
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 9.5e-11 69.7 58 67.2
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 9.5e-11 69.7 57 66.7
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 9.5e-11 69.7 57 66.7
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 9.5e-11 69.7 57 66.7
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 1.2e-10 69.3 57 66.7
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.2e-10 69.3 57 63.2
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 1.2e-10 69.3 57 66.7
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.2e-10 69.3 57 61.4
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 1.2e-10 69.3 57 63.2
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.2e-10 69.3 57 66.7
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.2e-10 69.3 57 66.7
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.2e-10 69.3 57 66.7
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 1.6e-10 68.9 57 63.2
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.6e-10 68.9 57 61.4
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.6e-10 68.9 57 64.9
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 1.6e-10 68.9 57 63.2
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 1.6e-10 68.9 57 63.2
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 1.6e-10 68.9 57 68.4
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 1.6e-10 68.9 59 66.1
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 2.1e-10 68.6 57 63.2
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 2.1e-10 68.6 57 63.2
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 2.1e-10 68.6 57 64.9
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 2.1e-10 68.6 57 63.2
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 2.8e-10 68.2 57 66.7
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 3.6e-10 67.8 57 64.9
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 3.6e-10 67.8 57 64.9
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 3.6e-10 67.8 57 64.9
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 3.6e-10 67.8 57 64.9
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 4.7e-10 67.4 57 64.9
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 4.7e-10 67.4 57 64.9
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 4.7e-10 67.4 57 61.4
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 6.1e-10 67.0 57 61.4
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 6.1e-10 67.0 57 61.4
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 6.1e-10 67.0 57 63.2
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 1.0e-09 66.2 57 64.9
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 1.0e-09 66.2 56 64.3
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 1.0e-09 66.2 57 64.9
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 1.4e-09 65.9 57 61.4
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 1.4e-09 65.9 57 61.4
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 1.4e-09 65.9 57 63.2
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 1.4e-09 65.9 57 63.2
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 1.8e-09 65.5 57 61.4
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 1.8e-09 65.5 57 63.2
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 1.8e-09 65.5 57 61.4
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 2.3e-09 65.1 57 61.4
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 3.1e-09 64.7 57 63.2
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 3.1e-09 64.7 57 63.2
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 3.1e-09 64.7 57 63.2
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 3.1e-09 64.7 57 63.2
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 3.1e-09 64.7 57 63.2
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 4.0e-09 64.3 56 64.3
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 5.2e-09 63.9 56 58.9
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 6.8e-09 63.5 57 57.9
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 1.2e-08 62.8 57 59.6
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 1.5e-08 62.4 57 56.1
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.5e-08 62.4 56 58.9
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 1.5e-08 62.4 57 59.6
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 1.5e-08 62.4 57 57.9
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 2.0e-08 62.0 57 57.9
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 3.4e-08 61.2 57 57.9
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 3.4e-08 61.2 57 59.6
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 5.8e-08 60.5 57 56.1
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 2.2e-07 58.5 57 54.4
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 2.2e-07 58.5 45 66.7
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 2.9e-07 58.2 57 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 4.9e-07 57.4 57 52.6
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 4.9e-07 57.4 57 52.6
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 6.4e-07 57.0 57 54.4
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 8.3e-07 56.6 47 63.8
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 4.1e-06 54.3 57 52.6


User provided reference genes

Program Settings