Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.7e-172 608.6 311 100.0
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 3.5e-71 272.7 320 50.9
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.5e-66 257.3 354 45.5
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 3.2e-64 249.6 324 48.5
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 4.1e-56 222.6 287 48.8
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 4.9e-49 199.1 324 39.5
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 8.3e-49 198.4 332 41.3
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 2.4e-48 196.8 322 40.4
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.1e-45 188.0 335 38.2
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 3.6e-44 183.0 325 37.2
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.8e-43 180.6 336 38.7
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.1e-43 179.9 321 38.6
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 6.8e-43 178.7 325 38.5
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 1.5e-42 177.6 331 37.2
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 3.4e-42 176.4 353 36.0
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 2.9e-41 173.3 328 36.0
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 2.4e-40 170.2 288 39.9
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 9.2e-40 168.3 335 34.6
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 9.2e-40 168.3 330 37.9
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.6e-39 167.5 330 38.2
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 2.7e-39 166.8 337 36.8
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.0e-38 164.9 335 34.3
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.3e-38 164.5 322 35.1
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 5.1e-38 162.5 326 35.9
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 6.6e-38 162.2 332 35.8
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 6.6e-38 162.2 332 38.9
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.1e-37 161.4 271 41.0
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 4.3e-37 159.5 317 36.0
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 2.1e-36 157.1 331 36.0
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 4.7e-36 156.0 331 36.0
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 3.4e-34 149.8 329 32.8
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 9.9e-34 148.3 331 32.9
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.3e-33 147.9 361 33.0
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.3e-33 147.9 320 35.0
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 4.9e-33 146.0 357 33.1
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.9e-32 144.1 357 32.8
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.2e-32 142.9 357 32.8
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 5.4e-32 142.5 327 33.0
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.7e-31 140.2 358 33.2
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 6.0e-31 139.0 359 33.4
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 3.9e-30 136.3 278 33.5
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 3.9e-30 136.3 368 29.6
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 8.7e-30 135.2 344 30.8
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 1.1e-29 134.8 325 34.2
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 1.3e-28 131.3 323 32.5
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 1.3e-28 131.3 368 29.3
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.6e-28 131.0 319 30.7
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 2.1e-28 130.6 312 34.0
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 6.2e-28 129.0 320 34.1
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.1e-27 128.3 215 39.1
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 1.8e-27 127.5 323 31.3
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 4.0e-27 126.3 326 32.5
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 4.0e-27 126.3 326 33.1
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 2.6e-26 123.6 323 32.8
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 4.4e-26 122.9 324 29.0
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 4.4e-26 122.9 201 39.8
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 9.9e-26 121.7 296 32.1
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.3e-25 121.3 317 33.4
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 1.3e-25 121.3 377 28.9
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.2e-25 120.6 168 44.6
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 2.4e-24 117.1 325 30.2
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 4.2e-24 116.3 94 63.8
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.2e-23 114.8 327 29.1
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.2e-23 114.8 338 30.8
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 7.9e-23 112.1 322 31.1
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.7e-22 110.9 327 30.6
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.3e-22 110.5 107 57.9
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.6e-22 109.0 215 36.3
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 8.7e-22 108.6 337 31.2
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 1.1e-21 108.2 341 26.7
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.5e-21 107.1 298 29.2
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 2.5e-21 107.1 179 40.8
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 3.3e-21 106.7 316 31.6
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 1.3e-20 104.8 355 28.7
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 1.6e-20 104.4 358 27.1
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 2.1e-20 104.0 347 29.1
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.4e-19 101.3 337 28.8
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 1.8e-19 100.9 177 37.9
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 2.4e-19 100.5 337 28.2
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 3.1e-19 100.1 350 27.4
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 3.1e-19 100.1 297 30.0
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 9.0e-19 98.6 201 34.8
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 3.4e-18 96.7 322 29.8
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 4.5e-18 96.3 347 29.4
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 4.5e-18 96.3 316 30.1
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 5.8e-18 95.9 338 26.3
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 5.8e-18 95.9 338 26.3
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.7e-17 94.4 212 31.6
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 2.9e-17 93.6 338 29.6
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 3.8e-17 93.2 324 28.4
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 6.4e-17 92.4 291 29.6
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.5e-16 89.4 213 34.3
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 7.1e-16 89.0 288 29.5
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 3.5e-15 86.7 320 28.8
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 3.5e-15 86.7 316 27.2
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.8e-14 84.3 335 28.1
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 3.9e-14 83.2 361 26.0
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 6.7e-14 82.4 54 74.1
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 1.1e-13 81.6 283 28.6
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.5e-13 81.3 316 29.1
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 1.5e-13 81.3 291 27.8
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 1.9e-13 80.9 186 29.6
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 7.4e-13 79.0 180 32.2
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 9.6e-13 78.6 305 25.6
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 2.1e-12 77.4 334 27.5
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 8.1e-12 75.5 214 28.0
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.8e-11 74.3 329 26.4
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 5.3e-11 72.8 182 35.7
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.6e-10 70.5 84 47.6
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 5.8e-10 69.3 93 44.1
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 4.9e-09 66.2 85 47.1
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 8.4e-09 65.5 43 69.8
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.4e-08 64.7 135 35.6
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 2.5e-08 63.9 60 50.0
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 4.2e-08 63.2 86 46.5
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 2.7e-07 60.5 159 32.1
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 3.5e-07 60.1 184 31.5
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.0e-06 58.5 66 47.0
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 1.3e-06 58.2 287 24.4
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 1.3e-06 58.2 52 50.0
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 1.3e-06 58.2 67 40.3


User provided reference genes

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