Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.1e-227 790.0 391 100.0
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.2e-187 659.1 366 88.0
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 8.0e-182 640.6 366 83.6
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 8.0e-182 640.6 366 83.9
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.0e-181 640.2 366 86.3
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 4.0e-181 638.3 385 81.3
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 7.5e-180 634.0 366 83.1
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.1e-178 630.2 363 83.7
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.8e-178 629.4 366 82.5
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.1e-178 628.2 366 81.4
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.4e-178 627.9 366 82.2
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 9.1e-178 627.1 366 81.4
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 3.5e-177 625.2 370 81.6
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 3.8e-176 621.7 366 83.1
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.1e-175 620.2 366 84.4
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 9.4e-175 617.1 366 81.7
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.8e-173 612.8 366 80.3
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.5e-172 609.8 366 81.4
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.6e-172 609.0 364 80.5
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.4e-172 608.6 366 80.6
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 3.4e-172 608.6 366 79.8
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 3.4e-172 608.6 365 80.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 7.5e-172 607.4 366 79.5
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.2e-171 605.9 366 79.2
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 6.3e-171 604.4 366 79.8
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.8e-170 602.8 366 80.1
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 5.4e-170 601.3 366 79.2
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 7.0e-170 600.9 366 79.0
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.6e-169 599.7 366 80.1
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.5e-169 598.2 366 81.7
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.9e-169 597.8 366 79.8
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.0e-168 597.0 366 78.4
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 9.5e-167 590.5 366 77.3
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 8.0e-166 587.4 366 79.2
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.3e-165 585.9 366 77.9
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 5.2e-165 584.7 366 77.9
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 5.2e-165 584.7 366 79.2
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.6e-164 582.4 359 80.8
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 3.4e-164 582.0 366 76.0
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 5.7e-164 581.3 366 77.0
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 7.5e-164 580.9 366 75.7
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.2e-163 579.3 366 78.1
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 2.9e-163 578.9 366 77.9
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.9e-163 578.9 366 77.9
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 3.7e-163 578.6 366 77.3
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.9e-163 578.2 366 76.0
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 8.3e-163 577.4 366 75.7
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.2e-162 575.5 366 75.7
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.6e-161 573.2 366 75.1
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.7e-161 572.4 366 75.7
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 7.8e-161 570.9 366 76.2
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 7.8e-161 570.9 366 73.8
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.7e-160 569.7 366 74.3
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 5.0e-160 568.2 366 73.2
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 8.6e-160 567.4 381 74.5
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.5e-159 565.8 395 72.2
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.5e-159 565.8 366 76.2
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 7.3e-159 564.3 383 73.6
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 2.8e-158 562.4 370 72.4
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.8e-158 562.4 359 79.1
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 3.6e-158 562.0 366 74.0
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 4.7e-158 561.6 398 70.4
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 8.0e-158 560.8 366 73.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.0e-157 560.5 378 74.3
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.0e-157 560.5 387 71.3
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 3.1e-157 558.9 366 74.3
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.1e-157 558.9 395 71.6
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.0e-157 558.5 374 74.3
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.2e-156 557.0 366 72.4
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.2e-156 557.0 366 72.4
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 2.0e-156 556.2 366 71.0
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.6e-156 555.8 366 72.1
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.6e-156 555.8 409 67.7
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 3.4e-156 555.4 366 74.9
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 4.4e-156 555.1 366 71.6
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 9.8e-156 553.9 369 71.8
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-155 553.5 366 74.6
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-155 553.5 366 74.6
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.7e-155 553.1 366 71.9
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.7e-155 553.1 366 71.9
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.7e-155 553.1 366 75.4
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.9e-155 552.4 366 76.8
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 8.3e-155 550.8 366 73.5
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-154 550.4 366 72.1
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.1e-154 550.4 366 70.5
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.2e-153 547.0 366 73.0
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.6e-153 546.6 364 71.2
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.7e-153 545.8 363 75.2
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.5e-153 545.4 365 71.8
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.0e-152 543.9 380 71.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.6e-152 541.2 366 74.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 8.6e-152 540.8 366 69.1
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.6e-152 540.8 366 73.2
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.9e-151 539.7 394 67.0
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 3.3e-151 538.9 364 72.5
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 3.3e-151 538.9 411 66.7
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 3.3e-151 538.9 374 70.3
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.6e-150 536.6 366 69.1
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.8e-150 535.8 365 70.1
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 4.7e-150 535.0 365 69.3
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 8.1e-150 534.3 367 72.5
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.0e-149 531.9 366 73.2
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 4.0e-149 531.9 364 71.2
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 2.2e-147 526.2 354 74.0
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 3.7e-147 525.4 366 69.4
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.4e-146 523.5 366 68.6
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 3.2e-146 522.3 366 67.5
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 5.4e-146 521.5 366 68.9
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 7.1e-146 521.2 366 69.1
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 9.2e-146 520.8 366 67.5
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.5e-145 518.8 361 72.9
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.0e-144 517.3 362 70.4
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 8.6e-144 514.2 326 76.1
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.3e-143 511.9 366 69.9
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.6e-143 511.5 366 65.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 4.4e-140 501.9 506 54.5
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 6.4e-139 498.0 367 68.7
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.0e-136 490.7 366 63.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 3.9e-136 488.8 419 62.5
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.6e-134 483.4 366 67.5
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.7e-134 481.9 289 78.9
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-133 480.7 366 63.9
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 3.4e-132 475.7 366 66.1
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 9.3e-130 467.6 318 70.8
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 3.5e-129 465.7 366 67.2
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.4e-117 427.2 369 56.6
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 4.2e-114 415.6 243 81.9
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 5.5e-114 415.2 369 55.0
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-113 414.1 325 64.3
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.1e-113 413.3 368 57.1
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 6.7e-104 381.7 214 84.6
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.1e-93 347.8 219 77.2
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.4e-93 346.7 374 51.9
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.2e-91 340.1 216 75.5
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 6.1e-89 332.0 367 47.7
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.7e-86 323.9 213 73.2
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 5.1e-80 302.4 403 41.7
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.5e-76 289.7 269 61.0
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.8e-61 240.7 173 71.7
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 7.0e-61 238.8 173 68.2
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.9e-52 209.1 277 44.8
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 6.6e-51 205.7 400 34.5
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.1e-50 204.9 114 85.1
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.6e-49 201.1 370 34.3
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.2e-48 196.1 124 74.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.5e-47 194.5 150 66.0
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.5e-47 192.2 126 69.0
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.9e-46 190.3 124 72.6
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.1e-45 188.3 124 73.4
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.2e-45 186.8 124 74.2
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.7e-44 183.7 124 67.7
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 2.7e-44 183.7 173 52.6
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 4.6e-44 183.0 124 67.7
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 5.0e-43 179.5 137 62.0
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.3e-42 176.4 113 78.8
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.4e-40 171.4 113 77.0
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 4.7e-33 146.4 98 70.4
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 2.3e-32 144.1 88 76.1
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.4e-31 140.2 80 85.0
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.1e-29 135.2 77 83.1
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.2e-29 133.7 76 81.6
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 9.5e-26 122.1 83 68.7
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 7.6e-23 112.5 62 83.9
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.4e-21 108.2 64 78.1
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 2.4e-21 107.5 84 57.1
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 3.0e-19 100.5 63 81.0
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 7.3e-18 95.9 64 62.5
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.8e-17 94.0 53 79.2
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.3e-14 85.1 185 32.4
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 6.4e-14 82.8 57 70.2
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 3.2e-13 80.5 51 66.7
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 7.1e-13 79.3 46 80.4
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.8e-09 67.4 172 33.1
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.8e-08 64.7 109 37.6
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 2.6e-07 60.8 33 84.8


User provided reference genes

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