Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1252.3 685 100.0
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1242.6 685 99.4
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 0.0e+00 1129.4 685 90.7
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 0.0e+00 1096.3 746 82.4
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 0.0e+00 1095.5 746 82.3
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1091.3 685 88.2
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 4.7e-312 1073.9 684 86.4
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 4.7e-312 1073.5 653 90.0
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 3.6e-310 1067.8 655 88.5
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.3e-309 1065.8 685 85.5
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.3e-309 1065.8 687 84.7
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 9.7e-308 1059.7 685 85.3
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 8.2e-307 1056.6 685 84.7
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 1.1e-306 1056.2 686 84.5
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 1.8e-306 1055.4 690 84.1
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 9.0e-306 1053.1 686 84.4
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 9.0e-306 1053.1 685 83.9
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 6.5e-304 1047.0 685 83.5
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 8.5e-304 1046.6 685 84.2
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.4e-303 1045.8 688 82.7
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.9e-303 1045.4 669 84.8
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.2e-303 1044.6 681 84.3
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.2e-302 1042.7 685 84.1
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 6.1e-302 1040.4 686 82.8
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 7.9e-302 1040.0 681 83.8
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 7.9e-302 1040.0 686 83.8
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.8e-301 1038.9 681 84.0
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.3e-301 1038.5 685 82.6
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 3.9e-301 1037.7 685 83.8
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 6.7e-301 1036.9 687 82.5
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 8.7e-301 1036.6 685 83.5
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 5.7e-300 1033.9 664 84.2
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 7.4e-300 1033.5 664 84.3
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.3e-299 1032.7 685 83.4
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.3e-299 1032.7 689 82.6
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 2.2e-299 1031.9 667 83.8
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 4.1e-298 1027.7 681 83.3
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 1.2e-297 1026.2 687 82.4
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 3.4e-297 1024.6 692 81.2
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 4.5e-297 1024.2 665 84.2
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 5.9e-297 1023.8 686 82.8
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 2.2e-296 1021.9 687 81.8
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 8.5e-296 1020.0 686 81.2
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.1e-295 1019.6 690 80.4
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 3.2e-295 1018.1 687 81.8
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 5.5e-295 1017.3 681 82.2
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 9.4e-295 1016.5 689 80.0
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 1.2e-294 1016.1 680 82.1
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.7e-294 1015.0 681 82.5
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.0e-293 1013.1 681 81.9
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.0e-293 1013.1 683 83.2
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 6.7e-293 1010.4 691 80.0
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 9.7e-292 1006.5 691 79.7
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 2.2e-291 1005.4 687 80.8
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 3.1e-290 1001.5 685 81.3
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 6.9e-290 1000.3 682 81.1
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 9.1e-290 1000.0 689 80.1
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 9.1e-290 1000.0 687 80.2
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 2.2e-288 995.3 687 81.4
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 8.5e-288 993.4 683 81.1
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 5.5e-287 990.7 660 82.9
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 1.2e-286 989.6 699 79.8
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-286 989.6 681 80.6
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 6.1e-286 987.3 691 78.6
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 6.1e-286 987.3 692 80.2
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.4e-285 986.1 726 76.4
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.4e-285 986.1 691 78.6
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 1.4e-285 986.1 692 78.3
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.4e-285 986.1 684 80.1
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.3e-285 985.3 730 76.7
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 3.9e-285 984.6 691 78.4
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 5.2e-285 984.2 693 78.1
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 8.8e-285 983.4 689 80.6
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 4.4e-284 981.1 726 76.0
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 4.5e-281 971.1 690 78.0
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 1.3e-280 969.5 692 77.5
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 5.0e-280 967.6 692 77.3
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.9e-279 965.7 683 78.3
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 4.2e-279 964.5 695 79.3
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 5.5e-279 964.1 689 78.4
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.0e-277 959.9 688 77.0
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 3.0e-277 958.4 685 78.4
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 3.0e-277 958.4 685 78.2
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 6.7e-277 957.2 655 81.2
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.6e-276 955.3 733 75.0
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 2.2e-275 952.2 691 76.4
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 3.7e-275 951.4 683 78.2
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 4.8e-275 951.0 574 91.6
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 6.3e-275 950.7 689 76.5
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 3.1e-274 948.3 677 76.5
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 1.6e-273 946.0 690 76.4
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 1.6e-273 946.0 690 76.4
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.5e-271 938.7 637 81.3
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 5.5e-271 937.6 722 73.3
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 3.0e-269 931.8 1035 56.8
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 4.0e-269 931.4 683 76.4
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 5.2e-269 931.0 685 76.8
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 3.7e-267 924.9 685 76.1
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.8e-266 922.5 685 76.2
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.7e-265 918.7 685 75.9
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.2e-263 910.6 719 73.4
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 2.8e-262 908.7 692 75.6
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 3.6e-262 908.3 685 76.2
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.7e-259 898.3 724 72.2
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 4.9e-259 897.9 616 80.8
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 6.3e-259 897.5 653 77.0
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.6e-254 881.7 740 70.5
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 1.4e-253 879.8 703 70.4
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.6e-246 855.1 683 69.4
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 3.1e-245 852.0 670 71.2
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 2.6e-244 849.0 685 70.7
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 6.0e-241 837.8 687 69.4
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 9.6e-223 777.3 703 66.3
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 8.1e-222 774.2 680 65.3
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 8.4e-219 764.2 552 78.4
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.2e-217 760.4 671 64.4
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 1.5e-212 743.4 654 64.2
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 3.5e-209 732.3 652 63.5
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 6.5e-171 605.1 424 80.9
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.7e-166 590.5 368 87.0
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 7.0e-165 585.1 693 50.1
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.7e-163 580.5 401 80.5
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.8e-137 493.4 342 74.3
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 4.7e-129 466.1 579 50.4
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.2e-113 414.8 373 67.8
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.5e-95 354.8 501 49.7
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 7.9e-92 342.4 507 49.3
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.8e-81 306.6 274 66.4
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.1e-80 303.9 704 33.0
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.0e-54 219.2 561 34.9
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 4.7e-52 210.3 775 31.2
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 4.0e-51 207.2 185 65.4
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 4.8e-49 200.3 129 80.6
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.1e-48 197.6 157 70.1
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 6.5e-46 189.9 126 79.4
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.7e-39 167.9 94 89.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 4.2e-29 134.0 93 84.9
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.6e-28 132.1 641 26.4
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.6e-23 115.5 667 23.4
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.5e-18 99.0 71 74.6
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 2.4e-16 91.7 744 22.8
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 6.0e-15 87.0 109 55.0
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.9e-14 84.3 199 38.2
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 6.6e-14 83.6 82 64.6
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 2.0e-10 72.0 777 18.5
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 4.4e-10 70.9 82 59.8
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 1.3e-09 69.3 43 76.7
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 6.4e-09 67.0 54 68.5
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.3e-06 58.5 28 96.4


User provided reference genes

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