Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.6e-111 406.0 194 100.0
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.2e-106 389.8 204 92.6
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.7e-98 362.1 194 89.7
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.6e-85 318.9 209 77.5
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.9e-84 315.5 196 82.7
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.8e-84 315.1 193 82.9
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.8e-84 315.1 193 82.9
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 2.2e-79 299.3 192 80.2
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 2.2e-79 299.3 192 79.7
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 4.2e-75 285.0 192 74.0
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 7.2e-75 284.3 193 75.1
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 9.4e-75 283.9 189 75.7
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 2.7e-74 282.3 191 74.9
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 1.8e-73 279.6 189 74.1
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 4.0e-73 278.5 188 74.5
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 4.0e-73 278.5 189 74.6
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 4.0e-73 278.5 192 74.0
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 6.7e-73 277.7 199 70.9
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 1.1e-72 276.9 189 73.0
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 2.0e-72 276.2 192 72.4
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 2.0e-72 276.2 199 71.9
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 2.6e-72 275.8 191 73.3
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 4.4e-72 275.0 190 73.2
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 7.5e-72 274.2 191 73.3
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 1.3e-71 273.5 192 72.9
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 1.3e-71 273.5 192 72.9
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 2.8e-71 272.3 199 69.8
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 2.8e-71 272.3 189 72.0
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 3.7e-71 271.9 206 68.9
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 3.7e-71 271.9 189 72.0
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 6.3e-71 271.2 189 73.0
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 6.3e-71 271.2 196 70.9
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 8.2e-71 270.8 189 72.5
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 1.1e-70 270.4 191 72.3
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 4.1e-70 268.5 189 71.4
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 5.3e-70 268.1 211 67.8
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 7.0e-70 267.7 189 70.4
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 1.2e-69 266.9 200 68.5
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 1.2e-69 266.9 202 68.3
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 1.2e-69 266.9 189 70.4
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 1.6e-69 266.5 190 71.1
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 2.7e-69 265.8 191 68.6
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 2.7e-69 265.8 192 71.9
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 2.7e-69 265.8 193 71.5
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 3.5e-69 265.4 189 72.5
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 4.5e-69 265.0 194 70.6
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 5.9e-69 264.6 192 70.3
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 7.7e-69 264.2 188 70.7
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 7.7e-69 264.2 188 70.7
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 2.2e-68 262.7 187 72.7
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 2.9e-68 262.3 192 69.8
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 3.8e-68 261.9 184 71.2
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 3.8e-68 261.9 184 71.2
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 8.5e-68 260.8 189 69.3
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 1.1e-67 260.4 192 68.2
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 1.1e-67 260.4 192 71.4
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 1.9e-67 259.6 192 68.2
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 1.9e-67 259.6 189 69.3
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 3.2e-67 258.8 189 67.2
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 4.2e-67 258.5 191 69.6
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 5.5e-67 258.1 189 69.8
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 5.5e-67 258.1 189 68.8
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 7.2e-67 257.7 191 69.1
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 7.2e-67 257.7 187 70.6
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 1.6e-66 256.5 191 68.6
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 2.1e-66 256.1 191 68.1
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 2.1e-66 256.1 189 68.8
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 2.1e-66 256.1 187 70.1
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 2.1e-66 256.1 192 68.2
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 2.7e-66 255.8 191 68.1
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 3.6e-66 255.4 189 69.3
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 4.7e-66 255.0 209 62.7
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 1.0e-65 253.8 191 67.0
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 3.0e-65 252.3 189 67.7
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 3.0e-65 252.3 189 67.7
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 3.0e-65 252.3 191 66.5
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 4.0e-65 251.9 191 67.0
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 4.0e-65 251.9 198 66.2
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 6.8e-65 251.1 206 64.6
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 1.5e-64 250.0 191 66.0
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 2.6e-64 249.2 187 69.0
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 4.4e-64 248.4 189 68.3
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 9.8e-64 247.3 191 67.5
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 1.7e-63 246.5 188 66.5
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 2.2e-63 246.1 191 67.0
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 2.2e-63 246.1 191 67.0
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 2.2e-63 246.1 191 67.0
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 3.1e-62 242.3 190 64.7
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 1.2e-61 240.4 190 65.8
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 4.5e-61 238.4 197 62.9
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 2.2e-60 236.1 188 62.2
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 5.0e-60 235.0 196 63.8
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 6.5e-60 234.6 193 62.7
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 1.9e-59 233.0 209 59.8
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 1.6e-58 229.9 189 61.4
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 3.0e-57 225.7 191 60.2
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 3.4e-56 222.2 158 72.8
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 2.8e-55 219.2 182 61.0
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 6.3e-55 218.0 194 59.3
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 1.2e-53 213.8 191 60.2
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 1.6e-50 203.4 195 55.9
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 6.1e-50 201.4 195 54.9
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 1.7e-44 183.3 202 52.0
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 1.8e-41 173.3 87 89.7
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 8.9e-41 171.0 130 64.6
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 2.0e-40 169.9 136 61.8
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 5.8e-40 168.3 136 61.0
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 1.3e-39 167.2 121 66.1
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 1.2e-37 160.6 176 54.5
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 8.9e-33 144.4 87 72.4
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 8.3e-31 137.9 187 42.8
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 3.9e-28 129.0 177 42.9
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 1.9e-27 126.7 88 78.4
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 5.6e-27 125.2 179 45.3
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 5.6e-27 125.2 84 69.0
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 5.6e-27 125.2 134 52.2
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 1.2e-13 80.9 81 58.0
Pp3c22_5030 Physcomitrium patens HOM05D000005 ORTHO05D000239 5.8e-08 62.0 57 43.9
Psat7g240480 Pisum sativum HOM05D000029 ORTHO05D037355 5.8e-08 62.0 41 70.7
Pp3c10_21693 Physcomitrium patens HOM05D000005 ORTHO05D000239 3.8e-07 59.3 58 43.1
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 1.4e-06 57.4 61 41.0
Pp3c10_21680 Physcomitrium patens HOM05D000005 ORTHO05D000239 1.4e-06 57.4 57 42.1
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 1.4e-06 57.4 37 67.6
MCO12G165 Micromonas commoda HOM05D002596 ORTHO05D002851 4.2e-06 55.8 74 36.5
Psat7g240520 Pisum sativum HOM05D000029 ORTHO05D037355 5.4e-06 55.5 32 78.1


User provided reference genes

Program Settings