Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 6.7e-275 950.3 553 100.0
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.4e-261 906.0 567 94.9
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 2.8e-71 273.9 418 48.1
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 7.3e-64 249.2 448 43.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 3.1e-62 243.8 447 44.1
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 5.3e-54 216.5 352 45.7
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 7.1e-51 206.1 558 35.7
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.2e-50 205.3 579 40.2
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.1e-50 204.5 473 37.6
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 5.1e-49 199.9 349 40.7
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 8.7e-49 199.1 366 42.6
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 8.7e-49 199.1 421 39.0
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.5e-48 197.6 349 41.3
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 3.3e-48 197.2 337 45.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.3e-47 195.3 593 36.9
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 4.8e-47 193.4 484 34.9
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 6.2e-47 193.0 359 40.4
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.1e-47 192.6 369 39.0
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.4e-46 191.8 402 38.1
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.4e-46 191.0 402 38.3
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.9e-46 189.5 372 38.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 8.4e-44 182.6 355 39.7
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.4e-43 181.0 554 34.3
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 7.1e-43 179.5 337 43.3
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.1e-40 172.2 357 39.2
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 4.3e-40 170.2 320 40.0
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 7.4e-40 169.5 452 34.5
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.6e-39 168.3 365 39.5
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 4.9e-36 156.8 338 39.1
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.5e-35 153.3 372 37.1
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 5.5e-35 153.3 377 36.6
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.6e-34 151.8 390 36.4
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 2.1e-34 151.4 662 34.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-34 151.4 373 37.0
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 6.0e-34 149.8 521 32.2
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.1e-33 146.7 311 37.6
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.9e-32 144.8 364 37.1
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.3e-32 144.1 375 37.1
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 9.6e-32 142.5 377 33.4
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 3.7e-31 140.6 305 39.3
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.8e-30 138.3 467 31.7
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 4.1e-30 137.1 584 29.6
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.7e-28 131.7 396 35.1
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 3.8e-28 130.6 598 28.4
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 6.5e-28 129.8 445 33.9
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 6.5e-28 129.8 436 33.7
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.1e-27 129.0 385 34.5
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 2.5e-27 127.9 366 35.2
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 4.2e-27 127.1 450 33.3
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 7.2e-27 126.3 424 30.0
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.2e-26 125.6 367 31.9
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 7.9e-26 122.9 292 33.9
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.9e-26 122.9 503 29.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-25 122.1 502 28.5
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 2.3e-25 121.3 425 32.7
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.3e-25 121.3 536 30.4
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.5e-24 117.9 351 33.9
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.5e-24 117.9 453 30.7
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 2.5e-24 117.9 244 42.2
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.3e-24 117.5 340 34.1
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 5.7e-24 116.7 387 32.6
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 7.4e-24 116.3 611 28.0
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.7e-24 115.9 402 33.6
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.8e-23 114.4 431 29.2
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.1e-22 112.5 555 27.9
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.8e-22 111.7 447 29.5
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.8e-22 111.7 380 30.5
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 3.1e-22 110.9 383 32.6
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 4.1e-22 110.5 294 38.4
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.2e-21 109.0 496 27.4
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.5e-21 108.6 358 32.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.4e-21 107.5 220 40.0
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 1.0e-20 105.9 507 30.0
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 1.7e-20 105.1 222 41.9
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 3.8e-20 104.0 392 31.4
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.1e-19 102.4 389 30.1
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.1e-19 102.4 239 38.5
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.9e-19 101.7 484 27.3
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.5e-19 101.3 341 34.6
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 3.2e-19 100.9 363 30.6
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 5.5e-19 100.1 319 33.5
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 5.5e-19 100.1 362 30.9
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 5.5e-19 100.1 362 30.9
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 5.5e-19 100.1 357 29.4
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 7.2e-19 99.8 342 33.0
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.2e-18 99.0 379 29.3
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.2e-18 99.0 325 34.8
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 2.1e-18 98.2 356 31.5
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 2.1e-18 98.2 281 33.8
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 2.7e-18 97.8 424 30.4
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 3.6e-18 97.4 425 28.7
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.6e-18 97.1 368 29.6
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 6.1e-18 96.7 231 38.1
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 6.1e-18 96.7 375 29.1
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 7.9e-18 96.3 375 30.7
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 7.9e-18 96.3 321 32.4
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 7.9e-18 96.3 417 30.0
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.0e-17 95.9 379 29.0
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.0e-17 95.9 483 27.5
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.0e-17 94.4 341 29.0
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 3.0e-17 94.4 545 27.0
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.9e-17 94.0 338 30.8
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 6.7e-17 93.2 408 28.7
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 6.7e-17 93.2 425 27.8
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 8.8e-17 92.8 322 30.7
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.5e-16 92.0 289 30.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 2.6e-16 91.3 416 26.9
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 2.6e-16 91.3 252 34.5
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 7.4e-16 89.7 399 28.1
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.3e-15 89.0 388 28.9
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.2e-15 88.2 352 30.1
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 2.2e-15 88.2 233 35.6
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 2.2e-15 88.2 309 33.7
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 8.2e-15 86.3 227 34.4
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 8.2e-15 86.3 303 31.0
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.8e-14 85.1 380 28.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.4e-14 84.7 264 34.8
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 3.1e-14 84.3 233 36.9
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 5.3e-14 83.6 376 26.3
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 6.9e-14 83.2 315 29.2
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 2.0e-13 81.6 397 27.5
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 3.4e-13 80.9 482 25.9
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 4.5e-13 80.5 153 43.1
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 5.9e-13 80.1 190 36.8
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 7.7e-13 79.7 483 25.9
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-12 78.2 349 27.5
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-12 78.2 395 27.6
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 3.8e-12 77.4 388 29.1
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 3.8e-12 77.4 374 26.2
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.8e-12 77.4 227 35.7
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.1e-11 75.9 194 37.6
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 1.4e-11 75.5 227 35.2
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 1.9e-11 75.1 310 31.0
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 2.5e-11 74.7 403 27.0
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 3.2e-11 74.3 149 35.6
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 9.4e-11 72.8 241 34.4
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 4.7e-10 70.5 200 34.0
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 2.3e-09 68.2 193 35.8
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 2.3e-09 68.2 241 34.4
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 5.2e-09 67.0 136 38.2
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 8.8e-09 66.2 371 27.2
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 8.8e-09 66.2 132 39.4
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 8.8e-09 66.2 317 26.5
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.7e-07 62.0 110 42.7
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 2.2e-07 61.6 122 39.3
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.8e-07 61.2 185 30.8
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 4.8e-07 60.5 132 37.9
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 6.3e-07 60.1 373 27.1
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 1.1e-06 59.3 277 27.4
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.4e-06 58.9 222 29.7
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 1.4e-06 58.9 132 37.1
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.8e-06 58.5 122 38.5
ECA238G1893 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.4e-06 58.2 175 28.6


User provided reference genes

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