Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 4.8e-121 438.0 239 100.0
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 7.9e-116 420.6 252 87.3
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 6.1e-100 367.9 252 75.4
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 4.1e-96 355.1 245 74.7
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 3.2e-93 345.5 252 75.8
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 5.5e-93 344.7 212 82.1
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 6.1e-92 341.3 211 79.6
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 6.1e-92 341.3 249 71.1
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 8.0e-92 340.9 189 85.7
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 8.0e-92 340.9 214 79.4
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 1.0e-91 340.5 252 72.6
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 1.0e-91 340.5 240 74.2
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 1.8e-91 339.7 240 74.2
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.3e-91 339.3 189 86.8
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 3.0e-91 339.0 214 79.0
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 4.0e-91 338.6 213 76.5
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 5.2e-91 338.2 240 73.8
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 6.8e-91 337.8 235 74.9
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 6.8e-91 337.8 213 77.9
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 8.8e-91 337.4 189 84.7
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 5.7e-90 334.7 252 67.1
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 5.7e-90 334.7 252 67.1
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 7.5e-90 334.3 212 76.9
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 7.5e-90 334.3 252 69.4
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 7.5e-90 334.3 252 67.1
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 1.3e-89 333.6 211 76.3
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 4.8e-89 331.6 208 76.0
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 1.1e-88 330.5 252 67.1
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 2.4e-88 329.3 189 82.0
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 2.4e-88 329.3 249 67.5
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 3.1e-88 328.9 214 74.8
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 4.1e-88 328.6 248 68.5
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 7.0e-88 327.8 249 68.3
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 7.0e-88 327.8 206 79.1
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 1.2e-87 327.0 211 76.3
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.2e-87 327.0 207 76.3
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 1.2e-87 327.0 206 75.7
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 2.7e-87 325.9 210 75.2
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.7e-87 325.9 214 74.3
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 3.5e-87 325.5 190 78.9
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 3.5e-87 325.5 189 81.5
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 5.9e-87 324.7 200 77.5
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 7.7e-87 324.3 249 67.9
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 1.0e-86 323.9 189 79.9
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 1.3e-86 323.6 189 79.4
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 1.3e-86 323.6 189 80.4
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 1.7e-86 323.2 189 82.0
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.3e-86 322.8 217 75.1
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 3.8e-86 322.0 252 68.3
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 3.8e-86 322.0 220 72.7
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 6.5e-86 321.2 233 75.1
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 1.5e-85 320.1 241 69.3
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 1.9e-85 319.7 209 74.2
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 3.3e-85 318.9 188 81.4
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 5.5e-85 318.2 189 81.0
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 7.2e-85 317.8 213 73.7
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 9.5e-85 317.4 210 74.3
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 1.2e-84 317.0 246 66.3
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 3.6e-84 315.5 189 79.4
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 6.1e-84 314.7 215 73.0
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 1.4e-83 313.5 198 75.3
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 2.3e-83 312.8 189 76.7
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 4.0e-83 312.0 189 77.2
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 5.2e-83 311.6 198 75.8
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 5.2e-83 311.6 245 69.8
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 8.9e-83 310.8 214 73.4
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.2e-82 310.5 216 72.7
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.5e-82 310.1 189 77.2
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 2.0e-82 309.7 188 77.1
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 2.0e-82 309.7 250 67.2
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 2.6e-82 309.3 188 77.7
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 3.4e-82 308.9 252 62.3
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 4.4e-82 308.5 190 76.3
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 7.5e-82 307.8 188 77.1
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 7.5e-82 307.8 189 77.2
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 1.3e-81 307.0 188 76.1
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 2.8e-81 305.8 216 71.8
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.8e-81 305.8 216 71.8
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 3.7e-81 305.4 238 65.1
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 4.9e-81 305.1 189 74.6
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 6.3e-81 304.7 239 63.2
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 6.3e-81 304.7 252 62.3
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 8.3e-81 304.3 189 74.1
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.4e-80 303.5 252 61.9
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 1.8e-80 303.1 208 70.7
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 1.8e-80 303.1 191 77.5
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 2.4e-80 302.8 251 62.9
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 2.4e-80 302.8 190 76.8
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.1e-80 302.4 237 66.2
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 5.4e-80 301.6 216 70.8
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.2e-79 300.4 250 62.0
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 1.6e-79 300.1 240 63.3
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 1.6e-79 300.1 240 63.3
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 1.6e-79 300.1 240 63.3
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.6e-79 300.1 239 64.9
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 2.0e-79 299.7 186 74.7
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 2.0e-79 299.7 241 63.1
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.7e-79 299.3 234 67.1
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 4.5e-79 298.5 251 62.5
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 5.9e-79 298.1 186 74.2
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 3.8e-78 295.4 264 59.1
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 5.0e-78 295.0 239 64.4
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 8.6e-78 294.3 163 87.7
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.9e-77 293.1 204 69.1
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 4.0e-75 285.4 189 72.5
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.5e-74 283.5 188 70.7
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 4.4e-74 282.0 278 57.2
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 6.4e-73 278.1 186 74.2
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 5.4e-72 275.0 233 62.7
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 7.0e-72 274.6 214 65.9
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 1.6e-71 273.5 188 67.0
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 3.5e-71 272.3 368 47.3
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 3.5e-71 272.3 165 78.8
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 5.0e-70 268.5 175 73.1
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 2.5e-69 266.2 151 82.8
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 1.2e-66 257.3 190 60.0
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 5.8e-66 255.0 202 62.4
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 5.8e-66 255.0 183 60.7
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 5.4e-64 248.4 188 58.5
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 8.1e-60 234.6 182 59.3
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 1.7e-54 216.9 182 56.6
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 6.8e-51 204.9 131 71.0
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 4.3e-45 185.7 104 84.6
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 7.3e-45 184.9 127 67.7
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 1.4e-43 180.6 104 80.8
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 4.8e-36 155.6 113 69.0
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 5.5e-24 115.5 166 40.4
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 9.3e-24 114.8 182 31.9
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 3.5e-23 112.8 61 80.3
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 6.0e-23 112.1 181 29.3
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 8.7e-22 108.2 193 29.5
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.1e-21 107.8 180 28.3
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 3.3e-21 106.3 182 28.0
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 4.3e-21 105.9 61 82.0
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.6e-20 104.0 180 30.0
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 2.1e-20 103.6 193 30.1
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 2.1e-20 103.6 180 30.0
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 2.8e-20 103.2 194 29.9
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 3.7e-20 102.8 177 29.4
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 4.8e-20 102.4 181 26.5
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 4.0e-19 99.4 164 29.9
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 4.0e-19 99.4 183 27.9
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 5.3e-19 99.0 184 27.7
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 4.5e-18 95.9 192 26.0
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 1.0e-17 94.7 178 26.4
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.3e-17 94.4 178 26.4
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 2.2e-17 93.6 178 27.0
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 4.9e-17 92.4 193 26.4
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 6.5e-17 92.0 178 25.8
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 1.1e-16 91.3 185 28.6
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.1e-16 91.3 193 24.9
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 1.4e-16 90.9 193 26.9
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 3.2e-16 89.7 200 25.5
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 3.2e-16 89.7 178 25.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 5.5e-16 89.0 205 25.9
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.7e-15 86.7 178 25.3
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 6.0e-15 85.5 192 24.0
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 7.9e-15 85.1 184 27.7
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 7.9e-15 85.1 178 24.7
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 1.3e-14 84.3 237 23.2
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 2.3e-14 83.6 165 28.5
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 3.9e-14 82.8 197 26.4
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 5.1e-14 82.4 235 23.0
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 5.1e-14 82.4 235 23.0
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 2.5e-13 80.1 178 26.4
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 2.5e-13 80.1 201 27.4
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 2.5e-13 80.1 179 24.6
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 1.6e-12 77.4 191 24.1
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 3.7e-12 76.3 182 26.9
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 4.8e-12 75.9 184 27.2
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 4.1e-11 72.8 184 26.1
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 9.0e-11 71.6 178 25.3
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 2.9e-09 66.6 37 78.4
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 7.9e-07 58.5 40 72.5


User provided reference genes

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