Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 3.3e-92 341.7 168 100.0
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 4.3e-76 288.1 164 85.4
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 9.6e-76 287.0 161 85.1
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 2.1e-75 285.8 164 82.9
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 2.8e-75 285.4 161 83.2
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 8.1e-75 283.9 161 83.9
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 1.1e-74 283.5 164 82.3
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.1e-74 283.5 158 85.4
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 2.4e-74 282.3 161 85.1
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 2.4e-74 282.3 164 82.9
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 3.1e-74 282.0 161 82.6
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.2e-73 280.0 166 82.5
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.0e-73 279.3 161 83.2
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 2.6e-73 278.9 166 81.9
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 2.6e-73 278.9 164 81.7
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 3.4e-73 278.5 161 83.2
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 3.4e-73 278.5 164 81.1
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 3.4e-73 278.5 161 83.2
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 5.8e-73 277.7 166 80.7
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 7.6e-73 277.3 161 79.5
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 7.6e-73 277.3 161 79.5
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 7.6e-73 277.3 161 79.5
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 7.6e-73 277.3 166 80.1
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 7.6e-73 277.3 161 81.4
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 7.6e-73 277.3 161 82.6
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 7.6e-73 277.3 166 81.3
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 1.0e-72 276.9 166 80.7
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.0e-72 276.9 161 78.9
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.0e-72 276.9 161 78.9
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 1.0e-72 276.9 166 82.5
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 1.0e-72 276.9 166 79.5
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 1.3e-72 276.6 161 80.7
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 1.3e-72 276.6 166 79.5
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 1.3e-72 276.6 161 80.7
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.7e-72 276.2 161 81.4
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 1.7e-72 276.2 164 81.7
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 3.8e-72 275.0 161 83.2
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 3.8e-72 275.0 161 81.4
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.9e-72 274.6 164 80.5
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 6.5e-72 274.2 166 80.1
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 8.4e-72 273.9 161 80.1
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.1e-71 273.5 166 80.1
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 1.4e-71 273.1 162 80.2
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 2.5e-71 272.3 161 79.5
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 3.2e-71 271.9 189 72.0
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 4.2e-71 271.6 164 78.0
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 4.2e-71 271.6 166 81.3
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 9.3e-71 270.4 164 77.4
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 1.2e-70 270.0 166 79.5
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 3.5e-70 268.5 161 80.7
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 4.6e-70 268.1 148 87.2
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 7.9e-70 267.3 161 77.6
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.3e-69 265.8 164 76.8
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 6.7e-69 264.2 164 76.2
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 1.1e-68 263.5 164 75.0
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 2.5e-68 262.3 164 77.4
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 2.5e-68 262.3 164 76.8
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 2.5e-68 262.3 169 74.6
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 4.3e-68 261.5 165 74.5
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 7.4e-68 260.8 169 74.0
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 1.6e-67 259.6 166 77.7
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.6e-67 259.6 166 77.1
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 8.2e-67 257.3 164 73.8
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 2.4e-66 255.8 167 73.1
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 4.1e-66 255.0 166 71.7
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 9.0e-66 253.8 161 75.2
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 1.5e-65 253.1 167 71.3
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 2.0e-65 252.7 167 71.3
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 2.0e-65 252.7 167 71.3
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.0e-65 252.7 175 71.4
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 2.0e-65 252.7 167 70.7
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 2.6e-65 252.3 161 71.4
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 2.6e-65 252.3 167 71.3
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 2.6e-65 252.3 166 71.7
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 2.6e-65 252.3 166 72.9
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.9e-65 251.1 163 76.7
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 5.9e-65 251.1 161 72.0
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 1.0e-64 250.4 167 70.1
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 2.2e-64 249.2 191 65.4
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 2.2e-64 249.2 166 71.1
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 2.2e-64 249.2 164 72.6
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 2.9e-64 248.8 161 74.5
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 8.4e-64 247.3 170 72.9
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 1.4e-63 246.5 164 70.7
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 7.2e-63 244.2 166 74.7
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 1.2e-62 243.4 167 68.9
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 7.9e-62 240.7 150 77.3
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 1.3e-61 240.0 141 82.3
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 1.8e-61 239.6 141 80.9
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 7.4e-60 234.2 161 73.9
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 2.0e-57 226.1 149 75.2
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 3.4e-57 225.3 145 73.8
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 5.9e-57 224.6 150 70.0
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 1.1e-55 220.3 145 74.5
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 1.1e-55 220.3 164 64.6
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 4.8e-51 204.9 164 64.6
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 8.2e-51 204.1 119 79.8
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 2.5e-47 192.6 127 70.1
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 4.2e-47 191.8 128 69.5
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 1.2e-46 190.3 161 62.1
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 1.6e-46 189.9 167 55.7
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 2.1e-46 189.5 122 71.3
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 3.6e-46 188.7 142 66.2
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 1.1e-42 177.2 98 85.7
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.8e-42 176.4 138 65.9
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 4.1e-42 175.3 98 84.7
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 4.1e-42 175.3 98 84.7
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 4.5e-41 171.8 165 52.7
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 8.5e-40 167.5 106 77.4
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 4.7e-38 161.8 97 78.4
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 6.1e-38 161.4 154 50.6
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.4e-37 160.2 110 68.2
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 2.4e-34 149.4 97 75.3
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 3.1e-34 149.1 240 38.3
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 3.1e-34 149.1 240 38.3
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 2.7e-33 146.0 159 48.4
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 4.5e-33 145.2 156 44.2
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 5.2e-29 131.7 74 79.7
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 5.7e-28 128.3 84 77.4
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 7.7e-25 117.9 90 64.4
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 9.4e-23 110.9 63 82.5
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 8.0e-22 107.8 64 76.6
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 3.7e-19 99.0 69 68.1
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 1.2e-12 77.4 157 29.3
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 1.2e-12 77.4 115 36.5
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 7.5e-12 74.7 43 76.7
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 9.8e-12 74.3 164 31.7
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 9.2e-10 67.8 42 71.4
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 7.8e-09 64.7 39 74.4
Os03g0715332 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 6.2e-06 55.1 55 49.1


User provided reference genes

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