Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.3e-106 389.8 209 100.0
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 2.8e-77 292.4 214 74.3
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 5.0e-74 281.6 211 74.4
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 3.3e-73 278.9 208 73.6
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 4.3e-73 278.5 211 73.9
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 5.6e-73 278.1 213 69.0
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 2.3e-71 272.7 211 72.0
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 5.8e-70 268.1 212 68.4
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 2.2e-69 266.2 213 65.3
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 2.2e-69 266.2 212 66.0
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 4.9e-69 265.0 213 65.7
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 3.2e-68 262.3 210 64.8
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.6e-67 260.0 221 66.5
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 7.8e-67 257.7 220 64.5
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 1.0e-66 257.3 213 66.7
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 3.9e-66 255.4 220 61.8
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 3.9e-66 255.4 202 69.8
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 5.0e-66 255.0 202 69.8
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 8.6e-66 254.2 215 65.1
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 5.6e-65 251.5 212 66.0
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 2.1e-64 249.6 208 63.9
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 1.8e-63 246.5 206 61.2
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 5.2e-63 245.0 210 64.8
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 6.8e-63 244.6 211 63.0
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.5e-62 243.4 215 58.6
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 1.5e-62 243.4 212 63.2
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 2.6e-62 242.7 213 62.9
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 2.6e-62 242.7 197 65.0
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 3.4e-62 242.3 217 61.3
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 5.8e-62 241.5 197 66.0
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 9.8e-62 240.7 206 60.2
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 9.8e-62 240.7 213 62.4
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 9.8e-62 240.7 197 64.5
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 3.7e-61 238.8 192 64.6
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 4.9e-61 238.4 216 59.3
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 4.9e-61 238.4 215 60.5
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 6.4e-61 238.0 210 59.0
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 1.9e-60 236.5 180 65.6
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 2.4e-60 236.1 202 62.9
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 2.4e-60 236.1 202 62.9
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 2.4e-60 236.1 202 62.4
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 2.4e-60 236.1 200 62.0
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 4.1e-60 235.3 210 59.5
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 2.1e-59 233.0 212 57.5
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 4.6e-59 231.9 210 59.5
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 4.6e-59 231.9 145 79.3
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 6.0e-59 231.5 211 58.8
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 1.0e-58 230.7 168 67.9
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 1.0e-58 230.7 199 62.8
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 1.3e-58 230.3 209 59.8
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 1.7e-58 229.9 205 62.0
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 1.7e-58 229.9 211 58.3
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 3.9e-58 228.8 163 69.9
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 5.1e-58 228.4 208 59.6
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 1.5e-57 226.9 228 56.1
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 5.6e-57 224.9 213 58.7
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 7.3e-57 224.6 169 65.7
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.2e-56 223.8 163 65.6
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.6e-56 223.4 210 57.1
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.8e-56 222.6 211 58.3
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 8.1e-56 221.1 206 55.3
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 1.1e-55 220.7 208 56.7
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.1e-55 220.7 210 57.6
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 1.4e-55 220.3 220 55.0
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 2.3e-55 219.5 202 58.4
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 2.3e-55 219.5 209 55.0
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 5.2e-55 218.4 192 59.9
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 8.9e-55 217.6 206 57.3
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 1.2e-54 217.2 188 61.7
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 2.0e-54 216.5 247 53.4
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 5.8e-54 214.9 204 56.9
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 9.9e-54 214.2 219 56.2
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 1.3e-53 213.8 219 53.9
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 1.3e-53 213.8 204 56.4
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 2.2e-53 213.0 206 55.3
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 2.9e-53 212.6 210 55.7
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 1.1e-52 210.7 201 60.2
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.1e-52 210.7 219 53.0
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 5.4e-52 208.4 219 53.0
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 4.6e-51 205.3 215 58.1
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 2.3e-50 203.0 219 55.3
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 3.0e-50 202.6 164 64.0
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 3.9e-50 202.2 167 61.7
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 3.9e-50 202.2 223 54.7
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 1.5e-49 200.3 200 52.5
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 2.5e-49 199.5 192 57.3
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 2.1e-48 196.4 222 53.2
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 9.9e-46 187.6 216 48.6
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 8.4e-45 184.5 192 53.1
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 4.2e-44 182.2 220 50.5
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 5.4e-44 181.8 206 52.4
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 9.2e-44 181.0 185 52.4
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 1.0e-42 177.6 167 52.1
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 2.3e-42 176.4 147 61.2
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 2.5e-41 172.9 189 54.0
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 1.6e-40 170.2 169 49.1
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.6e-40 170.2 169 49.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.6e-40 170.2 169 49.1
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 4.8e-40 168.7 127 66.9
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.4e-39 167.2 169 49.1
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 1.4e-39 167.2 213 50.2
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 3.1e-39 166.0 169 49.7
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 3.1e-39 166.0 168 49.4
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 4.0e-39 165.6 169 49.1
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 1.2e-38 164.1 169 47.3
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 2.0e-38 163.3 169 48.5
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 5.8e-38 161.8 110 70.0
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 7.6e-38 161.4 162 50.6
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 1.3e-37 160.6 202 41.6
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 1.7e-37 160.2 198 42.9
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 2.2e-37 159.8 128 63.3
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 8.4e-37 157.9 182 47.3
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.1e-36 157.5 151 60.3
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.4e-36 157.1 190 42.1
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.9e-36 156.8 195 42.6
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 2.4e-36 156.4 195 42.6
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 3.2e-36 156.0 195 42.1
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 3.2e-36 156.0 195 42.1
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 7.1e-36 154.8 115 67.8
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 2.1e-35 153.3 190 41.6
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.7e-35 152.9 169 47.3
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 4.6e-35 152.1 178 45.5
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 6.0e-35 151.8 195 42.1
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 3.0e-34 149.4 165 47.3
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 8.7e-34 147.9 167 46.1
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 2.8e-32 142.9 172 44.2
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 2.8e-32 142.9 165 44.8
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 1.8e-31 140.2 172 43.6
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 4.0e-31 139.0 165 44.2
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 4.0e-31 139.0 165 44.2
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 1.9e-28 130.2 213 37.6
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 1.1e-25 120.9 120 62.5
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 1.5e-25 120.6 151 48.3
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 1.2e-22 110.9 203 37.9
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 2.7e-19 99.8 64 71.9
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.5e-14 82.4 57 71.9
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 8.4e-13 78.2 70 57.1
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 4.3e-09 65.9 40 75.0
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 2.2e-08 63.5 40 70.0
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 1.1e-07 61.2 159 28.9
EL10Ac8g20239 Beta vulgaris HOM05D002232 ORTHO05D002323 1.2e-06 57.8 159 28.9
A01p21150 Brassica napus HOM05D002232 ORTHO05D002323 1.2e-06 57.8 173 30.1
BraA01t02025Z Brassica rapa HOM05D002232 ORTHO05D002323 1.5e-06 57.4 173 30.1
CARHR232440 Cardamine hirsuta HOM05D003184 ORTHO05D000394 1.5e-06 57.4 151 29.8
ECA247G0345 Erigeron canadensis HOM05D002232 ORTHO05D002323 1.5e-06 57.4 156 27.6
Lsat_1_v5_gn_4_63540 Lactuca sativa HOM05D002232 ORTHO05D002323 2.0e-06 57.0 164 29.3
HanXRQChr16g0516411 Helianthus annuus HOM05D002232 ORTHO05D002323 2.6e-06 56.6 152 31.6
MD01G1125700 Malus domestica HOM05D005509 ORTHO05D006411 2.6e-06 56.6 151 27.2
Sabra06G0012000 Salix brachista HOM05D002232 ORTHO05D002323 3.4e-06 56.2 173 28.3
Eucgr.I01612 Eucalyptus grandis HOM05D003184 ORTHO05D000394 4.5e-06 55.8 154 26.0
TAR622G0113 Trochodendron aralioides HOM05D003184 ORTHO05D000394 4.5e-06 55.8 161 26.1
CANSAT56G1351 Cannabis sativa HOM05D002232 ORTHO05D002323 5.9e-06 55.5 151 27.8
BcaC09g50344 Brassica carinata HOM05D002232 ORTHO05D002323 7.7e-06 55.1 173 28.3
BcaNung00196 Brassica carinata HOM05D002232 ORTHO05D002323 7.7e-06 55.1 168 31.0
PGSC0003DMG400013293 Solanum tuberosum HOM05D002232 ORTHO05D002323 7.7e-06 55.1 163 26.4
ClCG01G010680 Citrullus lanatus HOM05D002232 ORTHO05D002323 1.0e-05 54.7 162 27.2
Eucgr.D01440 Eucalyptus grandis HOM05D002232 ORTHO05D002323 1.0e-05 54.7 173 26.6
Os02g0219900 Oryza sativa ssp. japonica HOM05D002464 ORTHO05D002530 1.0e-05 54.7 162 30.2
Potri.016G008800 Populus trichocarpa HOM05D002232 ORTHO05D002323 1.0e-05 54.7 172 29.7


User provided reference genes

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