Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 9.7e-230 800.0 484 100.0
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 9.7e-230 800.0 484 100.0
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 7.6e-57 225.7 130 83.1
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.3e-37 161.0 102 73.5
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 7.7e-25 119.4 67 77.6
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 1.2e-22 112.1 81 60.5
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 4.6e-22 110.2 66 71.2
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 6.7e-21 106.3 72 68.1
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 6.7e-21 106.3 67 71.6
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 2.5e-20 104.4 78 62.8
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 5.7e-20 103.2 65 67.7
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.3e-19 102.1 65 66.2
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.3e-19 102.1 74 63.5
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 2.2e-19 101.3 66 65.2
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 2.8e-19 100.9 65 66.2
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 3.7e-19 100.5 71 63.4
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 3.7e-19 100.5 74 63.5
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 3.7e-19 100.5 70 64.3
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 4.8e-19 100.1 78 57.7
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 6.3e-19 99.8 73 58.9
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 6.3e-19 99.8 81 59.3
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 8.2e-19 99.4 74 62.2
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 2.4e-18 97.8 83 56.6
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 6.9e-18 96.3 92 52.2
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 6.9e-18 96.3 93 50.5
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 1.5e-17 95.1 81 54.3
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 4.5e-17 93.6 69 58.0
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.0e-16 92.4 70 55.7
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.9e-15 88.2 75 52.0
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 5.5e-15 86.7 76 51.3
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 3.6e-14 84.0 82 47.6
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 4.7e-14 83.6 71 50.7
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 6.1e-14 83.2 71 54.9
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.0e-13 82.4 71 53.5
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 1.4e-13 82.0 81 49.4
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.4e-13 82.0 64 56.2
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.8e-13 81.6 83 43.4
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 3.0e-13 80.9 82 43.9
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.8e-11 74.3 61 50.8
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 8.2e-11 72.8 69 44.9
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.4e-10 72.0 40 77.5
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 5.3e-10 70.1 71 40.8
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 5.3e-10 70.1 47 61.7
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 5.3e-10 70.1 42 66.7
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 9.1e-10 69.3 61 47.5
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.2e-09 68.9 81 39.5
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 1.5e-09 68.6 61 44.3
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.0e-09 68.2 74 41.9
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 2.0e-09 68.2 40 67.5
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.5e-09 67.4 74 41.9
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 4.5e-09 67.0 61 42.6
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 4.5e-09 67.0 64 45.3
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 4.5e-09 67.0 39 71.8
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 5.9e-09 66.6 67 37.3
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 5.9e-09 66.6 39 66.7
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 5.9e-09 66.6 64 42.2
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 5.9e-09 66.6 39 66.7
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 1.0e-08 65.9 33 78.8
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 1.0e-08 65.9 66 42.4
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 1.3e-08 65.5 38 71.1
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.7e-08 65.1 37 67.6
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.7e-08 65.1 67 43.3
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 2.2e-08 64.7 58 46.6
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.2e-08 64.7 42 59.5
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.9e-08 64.3 68 41.2
Rhsim02G0109200 Rhododendron simsii HOM05D016402 ORTHO05D016246 2.9e-08 64.3 84 33.3
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.8e-08 63.9 62 46.8
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 3.8e-08 63.9 38 65.8
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 5.0e-08 63.5 62 46.8
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 5.0e-08 63.5 62 45.2
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 5.0e-08 63.5 37 67.6
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 6.5e-08 63.2 69 40.6
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 6.5e-08 63.2 69 36.2
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 6.5e-08 63.2 74 44.6
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 8.5e-08 62.8 61 45.9
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 8.5e-08 62.8 38 63.2
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 8.5e-08 62.8 31 77.4
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.1e-07 62.4 38 63.2
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.9e-07 61.6 72 38.9
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.5e-07 61.2 41 58.5
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 2.5e-07 61.2 41 58.5
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 2.5e-07 61.2 63 41.3
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 3.2e-07 60.8 74 40.5
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 3.2e-07 60.8 73 41.1
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 4.2e-07 60.5 33 69.7
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 4.2e-07 60.5 38 63.2
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 4.2e-07 60.5 35 62.9
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 5.5e-07 60.1 38 63.2
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 5.5e-07 60.1 38 63.2
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 7.2e-07 59.7 71 36.6
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 7.2e-07 59.7 71 36.6
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 9.4e-07 59.3 72 38.9
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 2.1e-06 58.2 37 59.5
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 2.7e-06 57.8 60 46.7
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 2.7e-06 57.8 73 35.6
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 3.6e-06 57.4 60 46.7
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 3.6e-06 57.4 60 46.7
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 3.6e-06 57.4 60 46.7
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 3.6e-06 57.4 78 37.2
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 4.7e-06 57.0 70 35.7


User provided reference genes

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