Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.8e-276 955.3 474 100.0
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.5e-251 872.5 474 93.0
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 4.4e-227 791.2 480 82.3
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 7.3e-214 747.3 479 77.9
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 6.4e-210 734.2 479 76.8
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 9.6e-198 693.7 437 78.7
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 1.1e-196 690.3 485 74.4
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 6.9e-196 687.6 568 65.0
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 4.9e-194 681.4 483 71.8
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 1.1e-190 670.2 484 70.9
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.1e-188 663.7 488 70.3
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.4e-188 663.3 488 71.1
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 6.9e-188 661.0 443 73.4
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 1.2e-187 660.2 490 71.0
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 1.5e-187 659.8 488 70.1
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.0e-187 659.4 492 70.1
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 4.5e-187 658.3 492 69.9
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.7e-186 656.4 484 68.8
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.8e-186 655.2 492 69.7
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 5.0e-186 654.8 437 75.7
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 1.4e-185 653.3 494 69.2
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 2.5e-185 652.5 469 72.9
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 4.2e-185 651.7 484 69.0
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 4.2e-185 651.7 445 73.7
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 5.5e-185 651.4 488 68.9
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 5.5e-185 651.4 488 68.9
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 1.6e-184 649.8 453 72.4
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.1e-184 649.4 441 73.7
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 2.7e-184 649.0 441 73.7
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 2.7e-184 649.0 483 70.0
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 3.0e-183 645.6 441 72.8
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.1e-182 643.7 442 74.0
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 1.5e-182 643.3 430 75.6
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 1.5e-182 643.3 479 70.4
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 3.3e-182 642.1 441 72.6
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 9.7e-182 640.6 364 84.1
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 9.7e-182 640.6 441 72.3
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.4e-180 636.7 437 73.0
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 3.4e-179 632.1 440 72.3
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 2.9e-178 629.0 386 77.5
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 8.5e-178 627.5 391 77.2
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 8.5e-178 627.5 433 72.5
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 1.1e-177 627.1 485 66.8
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 1.4e-177 626.7 480 67.7
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 2.5e-177 625.9 391 77.0
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 5.5e-177 624.8 391 76.7
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 9.4e-177 624.0 369 80.2
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 1.2e-176 623.6 391 76.7
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 1.2e-176 623.6 391 77.0
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 2.7e-176 622.5 499 64.1
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 3.6e-176 622.1 392 77.0
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 4.6e-176 621.7 391 76.5
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 4.6e-176 621.7 443 70.9
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 1.0e-175 620.5 371 79.2
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 1.8e-175 619.8 494 65.8
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.0e-175 619.0 496 65.5
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 3.0e-175 619.0 465 69.0
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 5.1e-175 618.2 477 67.1
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 5.1e-175 618.2 467 68.5
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 3.3e-174 615.5 402 74.4
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 3.3e-174 615.5 414 73.2
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 4.4e-174 615.1 491 65.8
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 9.7e-174 614.0 489 65.0
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 4.8e-173 611.7 481 64.2
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.8e-172 609.8 483 65.4
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 1.8e-172 609.8 485 64.3
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 2.4e-172 609.4 362 81.8
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 3.1e-172 609.0 480 66.5
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 3.1e-172 609.0 467 67.9
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 4.1e-172 608.6 445 68.5
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 6.9e-172 607.8 392 74.5
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 1.2e-171 607.1 415 72.0
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 4.5e-171 605.1 488 64.8
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 1.7e-170 603.2 380 77.6
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 2.9e-170 602.4 392 74.7
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 3.8e-170 602.1 364 78.8
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 1.4e-169 600.1 364 78.6
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 1.4e-169 600.1 475 65.3
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 1.4e-169 600.1 440 68.2
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 1.9e-169 599.7 482 64.3
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 7.2e-169 597.8 486 65.4
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 2.7e-168 595.9 408 72.3
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 4.7e-168 595.1 370 77.6
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.1e-166 590.5 366 76.5
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 9.7e-166 587.4 366 75.4
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 1.7e-165 586.6 391 73.9
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 2.0e-163 579.7 383 74.4
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 5.0e-162 575.1 366 74.6
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 5.2e-159 565.1 427 65.3
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 9.7e-158 560.8 480 62.1
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.9e-153 546.6 371 73.0
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 9.4e-153 544.3 329 77.2
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 6.1e-152 541.6 346 74.0
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 2.3e-151 539.7 471 60.1
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 3.0e-151 539.3 445 61.8
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.6e-147 526.9 366 69.4
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 9.5e-145 517.7 427 62.1
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.1e-144 516.5 427 62.1
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.4e-143 513.8 370 68.1
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 8.3e-141 504.6 272 86.0
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 8.3e-133 478.0 372 62.1
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.9e-129 466.8 329 67.8
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 2.0e-126 456.8 413 57.4
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 5.8e-126 455.3 311 72.7
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 2.7e-123 446.4 353 60.6
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.2e-112 411.0 274 66.1
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 8.1e-112 408.3 245 75.9
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 6.2e-104 382.1 371 58.2
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.4e-103 380.9 244 73.8
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 1.8e-90 337.4 196 78.1
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.0e-82 311.6 236 64.4
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.9e-73 280.8 204 60.8
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.5e-73 280.4 204 60.3
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.7e-72 276.6 204 60.3
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 6.3e-72 275.8 317 46.4
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.8e-71 274.2 204 58.3
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 5.0e-69 266.2 299 45.5
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 7.7e-54 215.7 210 52.4
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 2.4e-39 167.5 141 66.0
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.7e-35 153.3 98 64.3
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 6.1e-19 99.8 93 66.7
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 2.0e-14 84.7 84 64.3
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 4.6e-14 83.6 275 24.4
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 4.6e-14 83.6 132 43.2
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 2.3e-13 81.3 295 21.0
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 2.3e-13 81.3 295 21.0
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 8.6e-13 79.3 298 22.5
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 8.6e-13 79.3 295 21.0
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.5e-12 78.6 269 22.7
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 2.5e-12 77.8 389 22.4
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 4.3e-12 77.0 295 21.0
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 4.3e-12 77.0 265 22.3
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 5.6e-12 76.6 267 21.3
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 7.3e-12 76.3 272 22.8
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 7.3e-12 76.3 269 21.9
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 9.5e-12 75.9 267 20.6
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.6e-11 75.1 280 22.9
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.1e-11 74.7 298 22.1
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.6e-11 73.9 272 22.4
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 3.6e-11 73.9 291 20.6
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 4.7e-11 73.6 272 23.2
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.1e-10 72.4 259 20.8
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 1.8e-10 71.6 275 22.2
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 2.3e-10 71.2 245 21.6
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 6.8e-10 69.7 265 21.1
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.2e-09 68.9 267 21.7
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 1.5e-09 68.6 265 20.8
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.5e-09 68.6 262 21.8
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 2.0e-09 68.2 272 22.8
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.6e-09 67.8 265 20.8
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.4e-09 67.4 293 22.9
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 7.5e-09 66.2 274 21.9
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 9.8e-09 65.9 240 21.2


User provided reference genes

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