Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 0.0e+00 1652.5 827 100.0
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 0.0e+00 1525.0 785 97.7
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 0.0e+00 1106.3 840 70.1
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 2.3e-308 1062.0 808 70.4
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 2.6e-307 1058.5 818 69.4
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 4.4e-299 1031.2 825 66.5
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 7.3e-294 1013.8 749 72.0
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.2e-265 918.3 860 60.9
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.2e-256 890.2 835 60.8
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.2e-229 799.7 791 57.8
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 6.6e-218 761.5 834 51.7
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-217 760.8 838 53.5
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 6.1e-216 755.0 846 50.6
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 4.9e-213 745.3 846 51.4
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.7e-210 736.9 830 50.8
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.0e-210 735.3 784 52.7
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 3.3e-209 732.6 812 52.2
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 5.4e-204 715.3 845 49.8
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.3e-202 710.7 837 50.1
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.7e-202 710.3 823 50.3
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 3.9e-202 709.1 794 52.1
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 3.9e-202 709.1 837 49.9
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 5.0e-202 708.8 836 50.6
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 6.6e-202 708.4 822 50.4
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.1e-201 707.6 837 50.3
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 2.8e-200 703.0 840 49.2
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.3e-199 699.9 834 49.8
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.0e-198 696.8 833 49.6
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 4.4e-198 695.7 821 49.7
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 9.8e-198 694.5 855 48.3
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 9.2e-196 688.0 834 49.8
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.1e-195 686.8 834 49.8
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.0e-194 682.9 873 48.2
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 6.8e-191 671.8 852 48.8
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 8.9e-191 671.4 849 47.8
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 2.9e-189 666.4 839 48.9
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 8.4e-189 664.8 846 48.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 7.1e-188 661.8 848 47.9
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 2.7e-187 659.8 816 49.0
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.3e-186 657.5 991 42.9
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.7e-186 657.1 871 47.4
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 7.3e-185 651.7 863 47.0
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.6e-184 650.6 884 46.9
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.4e-183 647.5 845 47.8
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 6.9e-183 645.2 820 48.3
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 8.9e-183 644.8 972 43.2
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.2e-182 644.4 908 45.0
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 1.5e-182 644.0 850 46.5
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.0e-182 643.7 835 45.6
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.2e-179 634.4 756 52.5
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.1e-176 623.6 837 45.5
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.8e-176 623.2 841 45.8
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 6.2e-176 622.1 836 45.0
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-175 621.3 816 46.2
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.0e-175 619.4 808 46.9
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 2.2e-173 613.6 808 45.5
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.9e-172 610.5 835 43.8
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 8.1e-168 595.1 858 44.4
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 9.0e-167 591.7 1028 39.1
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 2.0e-166 590.5 942 42.0
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 4.5e-166 589.3 837 45.2
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 1.7e-165 587.4 858 44.6
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 2.2e-165 587.0 833 43.6
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 3.8e-165 586.3 812 43.2
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 2.4e-164 583.6 812 43.3
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.4e-164 583.6 834 43.2
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.7e-163 580.1 870 41.8
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 3.5e-163 579.7 807 43.7
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 6.7e-162 575.5 853 42.3
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 2.5e-161 573.5 828 42.9
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 7.4e-161 572.0 834 41.7
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 7.4e-161 572.0 833 43.0
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.8e-159 567.4 925 40.8
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.2e-157 560.5 931 41.0
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.7e-155 553.5 819 43.8
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 5.1e-154 549.3 815 41.8
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 6.7e-154 548.9 737 46.9
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.9e-153 547.4 838 41.1
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 5.9e-150 535.8 837 40.1
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.7e-149 534.3 841 41.1
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.8e-149 533.1 836 39.5
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 3.8e-149 533.1 834 40.9
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.7e-147 526.9 846 39.4
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.6e-147 526.2 646 50.5
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 2.3e-146 523.9 667 47.1
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.3e-145 520.0 568 52.1
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.3e-145 519.6 981 38.4
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.5e-142 511.1 825 40.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.6e-142 510.4 809 41.0
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 7.7e-142 508.8 866 40.1
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 4.6e-139 499.6 804 40.8
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.8e-138 497.7 350 72.9
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 8.5e-133 478.8 822 39.3
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.0e-122 445.3 823 37.7
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.1e-119 435.3 826 36.8
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.0e-117 426.4 395 60.8
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.6e-115 421.4 830 35.9
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 2.7e-115 420.6 814 35.0
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.8e-114 416.0 876 36.1
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 8.8e-114 415.6 501 48.5
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.5e-108 397.5 698 40.5
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 7.0e-103 379.4 570 42.1
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 9.2e-103 379.0 627 39.1
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.9e-101 374.0 840 33.3
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.5e-100 371.7 828 34.8
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 8.3e-96 355.9 522 42.7
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 4.1e-95 353.6 663 36.5
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.5e-94 350.5 734 36.4
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.9e-92 344.7 852 30.3
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 9.9e-81 305.8 469 41.8
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.9e-79 301.6 469 41.6
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 9.2e-79 299.3 476 40.1
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 4.6e-78 297.0 584 36.8
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 7.8e-78 296.2 826 31.5
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.0e-77 295.8 822 30.5
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.9e-76 291.6 477 39.4
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 9.5e-76 289.3 792 29.4
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 6.2e-75 286.6 481 39.9
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 5.8e-73 280.0 491 38.7
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.8e-73 280.0 436 40.4
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 7.6e-73 279.6 461 38.2
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 7.6e-73 279.6 672 34.4
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 7.6e-73 279.6 776 32.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 4.9e-72 276.9 535 36.8
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 6.4e-72 276.6 489 38.7
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.9e-71 275.0 627 33.8
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.2e-71 274.2 437 39.4
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 9.2e-71 272.7 487 38.4
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.7e-70 271.2 477 37.9
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 3.0e-69 267.7 461 38.0
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 3.0e-69 267.7 461 38.0
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.8e-66 258.5 396 40.4
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.8e-64 250.8 293 53.9
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.6e-62 245.4 634 32.2
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.1e-61 240.4 676 31.8
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 4.3e-60 237.3 825 28.1
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 2.0e-57 228.4 451 35.7
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 7.6e-57 226.5 634 32.3
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.9e-56 224.6 664 30.7
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 3.8e-56 224.2 649 30.8
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 2.4e-55 221.5 460 35.4
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.1e-52 212.6 532 30.6
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.9e-44 185.3 269 48.0
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.8e-43 180.6 474 30.2
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 6.9e-42 176.8 100 73.0
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 6.5e-40 170.2 828 24.2
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 5.5e-39 167.2 124 71.0
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 4.6e-38 164.1 105 68.6
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 5.1e-37 160.6 482 26.3
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.2e-33 149.4 193 47.7
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.5e-33 149.1 398 33.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 2.5e-31 141.7 406 33.7
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 8.2e-27 126.7 724 23.1
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.1e-26 124.8 179 35.8
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.9e-24 118.2 100 56.0
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 7.2e-15 87.0 72 45.8
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.2e-14 86.3 73 50.7
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 2.3e-13 82.0 79 55.7
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 6.3e-11 73.9 71 36.6
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 8.2e-11 73.6 82 43.9
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 2.4e-10 72.0 50 70.0
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-09 67.4 108 32.4
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 6.5e-08 63.9 444 23.9
Nn1g05401 Nelumbo nucifera HOM05D004295 ORTHO05D004901 4.7e-06 57.8 37 70.3
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 6.1e-06 57.4 44 59.1
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 8.0e-06 57.0 62 40.3


User provided reference genes

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