Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 2719.1 1444 100.0
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 2719.1 1444 100.0
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 2046.2 1483 75.6
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1977.6 1460 73.0
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1954.9 1439 75.1
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1885.5 1477 68.7
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1845.1 1464 67.3
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1832.0 1465 66.1
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1828.1 1463 67.7
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1815.0 1448 68.0
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1811.6 1537 63.4
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1793.9 1544 63.8
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1788.9 1478 63.8
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1778.8 1467 64.2
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1771.5 1523 64.5
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1769.6 1519 63.2
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1769.6 1464 67.0
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1769.2 1532 61.8
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1763.4 1491 63.3
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1760.0 1458 65.0
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1755.0 1519 64.6
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1754.2 1520 63.9
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1753.4 1459 66.0
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1749.6 1520 63.8
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1747.3 1460 65.3
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1746.1 1519 64.1
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1744.9 1481 64.3
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1743.8 1373 68.6
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1739.5 1455 66.3
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1732.2 1463 64.0
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1724.9 1583 62.3
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1724.1 1469 64.3
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1720.3 1339 66.8
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1716.4 1454 64.6
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1713.7 1436 65.0
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1712.2 1476 65.2
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1707.6 1460 63.8
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1704.1 1456 63.1
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1703.7 1489 66.1
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1703.3 1520 62.6
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1703.0 1470 64.5
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1694.1 1469 63.7
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1691.8 1370 67.0
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1686.4 1453 62.6
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1682.9 1541 60.7
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1671.4 1503 62.1
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1645.2 1481 61.4
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1636.3 1349 66.6
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1635.5 1584 59.8
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1627.1 1460 61.2
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1626.3 1479 60.9
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1626.3 1457 61.9
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1620.5 1536 59.1
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1619.4 1029 77.6
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1617.1 1476 60.6
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1598.6 1519 58.1
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1597.4 1460 61.0
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1595.5 1550 58.9
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1592.0 1456 63.0
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1587.4 1246 66.3
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1582.0 1554 58.5
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1577.0 1230 67.2
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1561.6 1270 64.3
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1561.6 1349 64.0
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1560.8 1518 59.5
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1543.5 1327 61.9
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1530.8 1326 61.7
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1520.0 1300 67.2
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1498.8 1434 58.9
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1486.9 1274 65.5
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1461.4 1481 55.2
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1461.0 1469 54.3
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1460.3 1476 55.1
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 1459.5 1367 57.8
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1455.3 1457 55.5
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1454.1 1408 56.2
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 1438.3 1442 55.6
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1434.9 1375 57.3
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1431.4 1281 57.9
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 1431.0 1377 57.1
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1430.6 1365 57.2
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1429.1 1386 57.4
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1426.4 1177 67.2
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 1423.7 1379 56.7
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 1414.8 1427 54.3
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1400.2 856 82.2
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1395.9 1276 64.3
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1377.8 1063 63.8
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1334.7 1510 51.2
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1307.0 764 84.3
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1302.0 1406 50.9
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1173.3 1251 52.0
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1142.5 760 72.8
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 0.0e+00 1117.4 859 66.2
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 0.0e+00 1114.0 863 72.4
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 9.1e-308 1060.8 1028 53.0
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 2.8e-296 1022.7 1038 51.7
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 2.5e-289 999.6 1028 51.6
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 6.0e-259 898.7 963 59.1
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.5e-257 894.0 1039 48.3
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 6.9e-255 885.2 481 89.0
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 7.4e-233 812.0 832 57.5
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 2.2e-224 783.9 812 52.0
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 2.9e-213 746.9 813 58.1
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 1.4e-210 738.0 813 57.7
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 9.4e-196 688.7 811 48.0
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.3e-181 641.7 480 68.8
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 8.3e-168 595.9 657 65.0
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 5.6e-164 583.2 367 77.9
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 1.6e-163 581.6 678 63.6
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 2.9e-160 570.9 498 57.6
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 1.1e-143 515.8 309 78.0
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 6.6e-141 506.5 573 61.4
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 9.3e-119 433.0 327 65.7
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.2e-118 432.6 288 72.6
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 7.9e-102 376.7 235 78.3
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 4.8e-91 340.9 206 79.6
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 4.8e-83 314.3 208 72.1
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 8.5e-80 303.5 224 67.9
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 5.7e-76 290.8 600 39.2
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.0e-73 282.3 173 76.3
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 5.7e-68 264.2 440 44.5
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 5.9e-65 254.2 892 25.9
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 2.5e-63 248.8 659 29.3
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 7.0e-58 230.7 145 72.4
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 1.6e-57 229.6 893 24.7
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 8.0e-54 217.2 232 55.6
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.9e-50 206.1 142 71.1
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 2.5e-47 195.7 115 82.6
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.4e-45 189.9 166 60.2
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 4.4e-44 184.9 157 61.8
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 4.4e-44 184.9 139 64.7
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 7.5e-44 184.1 147 64.6
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 2.4e-42 179.1 108 77.8
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 7.1e-34 151.0 156 51.3
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 7.8e-33 147.5 328 35.1
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 1.3e-30 140.2 148 52.7
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 1.1e-29 137.1 368 45.9
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 1.8e-29 136.3 85 76.5
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 5.3e-29 134.8 156 52.6
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 1.5e-28 133.3 103 59.2
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 3.2e-26 125.6 76 71.1
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 7.1e-26 124.4 111 60.4
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 2.7e-25 122.5 80 73.8
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 3.3e-23 115.5 159 50.3
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 4.3e-23 115.2 69 78.3
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 7.3e-23 114.4 137 49.6
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 7.3e-23 114.4 144 43.8
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 2.1e-22 112.8 246 33.3
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 8.1e-22 110.9 75 74.7
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 4.0e-21 108.6 104 57.7
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 7.6e-20 104.4 80 58.8
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 6.4e-19 101.3 64 70.3
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 7.1e-18 97.8 89 60.7
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 9.3e-18 97.4 88 53.4
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 2.5e-15 89.4 96 50.0
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 9.6e-15 87.4 53 77.4
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 1.2e-12 80.5 71 49.3
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 2.6e-12 79.3 87 55.2
Os09g0410300 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 3.4e-12 79.0 155 43.9
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 2.5e-10 72.8 73 47.9
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 1.2e-09 70.5 70 52.9
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 1.6e-09 70.1 37 81.1
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 4.6e-09 68.6 48 68.8
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 6.0e-09 68.2 47 70.2
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 5.1e-08 65.1 171 28.7
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 9.6e-07 60.8 289 20.4
SHI18922 Sapria himalayana HOM05D004216 ORTHO05D004926 4.8e-06 58.5 30 80.0


User provided reference genes

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