Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 1.9e-119 432.6 224 100.0
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.2e-81 307.0 221 75.6
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 1.1e-79 300.4 219 74.9
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 2.3e-72 276.2 224 70.5
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 3.6e-70 268.9 208 73.1
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 5.2e-69 265.0 227 68.3
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 7.3e-63 244.6 181 76.2
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 4.9e-59 231.9 233 59.2
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 2.4e-58 229.6 231 59.7
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 1.6e-57 226.9 229 59.8
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 7.8e-57 224.6 229 57.6
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 1.1e-55 220.7 229 56.3
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 1.9e-55 219.9 229 56.8
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 2.5e-55 219.5 233 54.5
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 1.6e-54 216.9 224 55.4
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 1.4e-53 213.8 230 57.0
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 1.8e-53 213.4 233 54.5
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 2.4e-53 213.0 233 54.1
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 3.1e-53 212.6 233 54.1
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 8.9e-53 211.1 224 55.4
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 8.9e-53 211.1 197 58.9
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.2e-52 210.7 204 60.3
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 1.5e-52 210.3 201 57.7
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 7.6e-52 208.0 197 58.4
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 7.6e-52 208.0 225 53.3
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 2.9e-51 206.1 215 55.8
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 2.9e-51 206.1 232 52.6
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 3.8e-51 205.7 229 54.6
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 6.4e-51 204.9 234 53.4
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 1.1e-50 204.1 227 53.7
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 1.4e-50 203.8 214 54.7
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 1.4e-50 203.8 233 52.8
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 1.9e-50 203.4 230 53.5
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 2.4e-50 203.0 219 53.4
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 2.4e-50 203.0 226 53.1
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 5.4e-50 201.8 219 53.0
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 5.4e-50 201.8 224 54.9
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 5.4e-50 201.8 224 52.2
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 2.1e-49 199.9 219 53.0
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 4.6e-49 198.7 213 57.3
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 7.8e-49 198.0 217 56.2
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 7.8e-49 198.0 232 53.4
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 1.0e-48 197.6 229 54.1
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 1.0e-48 197.6 208 55.3
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 1.7e-48 196.8 216 54.6
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 3.9e-48 195.7 222 55.4
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 6.6e-48 194.9 203 55.2
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 6.6e-48 194.9 218 53.2
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 6.6e-48 194.9 234 51.3
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 8.7e-48 194.5 232 53.4
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 8.7e-48 194.5 203 56.2
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.9e-47 193.4 234 51.7
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.5e-47 193.0 218 54.1
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 4.3e-47 192.2 217 53.9
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 4.3e-47 192.2 232 52.2
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 2.8e-46 189.5 199 55.3
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 6.2e-46 188.3 232 50.0
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 6.2e-46 188.3 237 47.3
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 8.1e-46 188.0 208 52.9
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 1.4e-45 187.2 214 51.9
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 2.4e-45 186.4 236 50.8
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 3.1e-45 186.0 227 48.9
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 4.0e-45 185.7 204 54.4
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 4.0e-45 185.7 197 53.3
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 4.0e-45 185.7 198 52.0
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 5.3e-45 185.3 233 48.1
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 6.9e-45 184.9 225 49.8
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 9.0e-45 184.5 216 53.7
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 3.4e-44 182.6 218 51.4
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 1.7e-43 180.3 228 47.4
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 1.7e-43 180.3 227 48.9
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 3.8e-43 179.1 235 48.1
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 8.4e-43 177.9 228 48.7
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 7.1e-42 174.9 221 48.0
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 1.2e-41 174.1 252 46.0
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 1.6e-41 173.7 228 45.6
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.6e-41 173.7 233 46.4
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 2.7e-41 172.9 212 50.5
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 3.5e-41 172.6 183 55.2
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 2.3e-40 169.9 235 46.4
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 2.3e-40 169.9 196 52.0
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.5e-39 166.4 236 44.1
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 4.3e-39 165.6 231 45.9
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 8.1e-38 161.4 218 44.5
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 1.1e-37 161.0 234 45.7
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 5.3e-37 158.7 228 43.9
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.4e-36 156.0 237 42.6
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 4.5e-36 155.6 237 42.2
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 7.6e-36 154.8 226 44.7
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 9.9e-36 154.5 198 44.4
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 1.3e-35 154.1 227 42.3
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 1.7e-35 153.7 216 44.9
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 3.8e-35 152.5 234 41.5
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.9e-34 150.2 201 44.8
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 5.5e-34 148.7 193 51.3
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 2.7e-33 146.4 233 42.1
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 7.9e-33 144.8 196 48.0
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 2.3e-32 143.3 231 42.0
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.9e-32 142.5 221 41.2
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 6.7e-32 141.7 231 41.6
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 8.7e-32 141.4 230 40.9
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 1.1e-31 141.0 207 42.5
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 1.1e-31 141.0 230 41.7
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 4.3e-31 139.0 226 42.5
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 3.7e-30 136.0 209 43.5
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 4.8e-30 135.6 204 38.2
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 1.1e-29 134.4 231 40.7
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 2.4e-29 133.3 201 41.3
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 4.0e-29 132.5 220 42.7
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 4.0e-29 132.5 153 57.5
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 4.0e-29 132.5 196 43.4
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 5.3e-29 132.1 206 39.3
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 1.2e-28 131.0 204 42.6
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.6e-28 129.8 212 40.1
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 7.6e-28 128.3 205 40.5
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 1.0e-27 127.9 213 41.3
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 1.3e-27 127.5 221 40.3
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 6.5e-27 125.2 230 39.6
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 2.5e-26 123.2 214 38.3
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 2.1e-25 120.2 237 38.4
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 2.7e-25 119.8 214 38.8
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 2.7e-25 119.8 224 37.9
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 4.6e-25 119.0 238 36.6
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 1.3e-24 117.5 227 38.3
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 1.3e-24 117.5 217 38.7
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 3.0e-24 116.3 232 37.1
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 3.0e-24 116.3 205 38.5
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 5.1e-24 115.5 230 38.3
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 9.6e-23 111.3 239 35.1
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 9.6e-23 111.3 215 35.8
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 8.2e-22 108.2 214 38.8
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 1.4e-21 107.5 229 37.6
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.4e-21 106.7 159 40.9
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 3.1e-21 106.3 108 48.1
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 5.3e-21 105.5 197 34.5
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 4.5e-20 102.4 214 37.4
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 4.5e-20 102.4 214 37.4
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 4.5e-20 102.4 214 37.4
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 7.2e-18 95.1 120 51.7
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 1.2e-17 94.4 193 35.8
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 6.1e-17 92.0 178 37.1
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 1.0e-16 91.3 221 33.5
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 1.8e-16 90.5 176 35.8
CDE02G4410 Ceratophyllum demersum HOM05D001668 ORTHO05D005522 1.5e-15 87.4 150 39.3
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 1.6e-14 84.0 223 32.3
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 4.8e-14 82.4 87 51.7
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 5.3e-13 79.0 104 47.1
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 4.5e-12 75.9 169 35.5
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 7.7e-12 75.1 100 41.0
Pp3c11_20170 Physcomitrium patens HOM05D003097 ORTHO05D005522 2.5e-10 70.1 91 39.6
Aa31LG8G6630 Aethionema arabicum HOM05D003097 ORTHO05D003437 4.2e-10 69.3 193 31.6
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 2.7e-09 66.6 223 31.4
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 6.1e-09 65.5 104 34.6
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 1.0e-08 64.7 211 27.0
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 1.4e-08 64.3 187 29.9
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 2.3e-08 63.5 69 53.6
RcHm_v2.0_Chr2g0099391 Rosa chinensis HOM05D003097 ORTHO05D003437 3.0e-08 63.2 214 30.4
TWI75G0491 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 3.9e-08 62.8 123 32.5
FAN23G2650 Fragaria x ananassa HOM05D003097 ORTHO05D003437 6.7e-08 62.0 178 29.8
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 8.8e-08 61.6 167 29.3
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 2.0e-07 60.5 87 44.8
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 2.0e-07 60.5 87 44.8
Gohir.A11G175100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 5.7e-07 58.9 176 30.1
Atru.chr5.3226 Acer truncatum HOM05D003097 ORTHO05D003437 9.7e-07 58.2 188 30.9
Phvul.003G016700 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 9.7e-07 58.2 136 33.1
Dinv33630 Davidia involucrata HOM05D003097 ORTHO05D003437 1.3e-06 57.8 180 28.3
SGA_v2.0_scaffold80G25871 Striga asiatica HOM05D003097 ORTHO05D003437 1.3e-06 57.8 109 34.9
BcaNung03019 Brassica carinata HOM05D003097 ORTHO05D003437 1.7e-06 57.4 70 41.4
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 1.7e-06 57.4 96 39.6
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 1.7e-06 57.4 96 39.6
CSS0003058 Camellia sinensis var. sinensis HOM05D001139 ORTHO05D000936 2.8e-06 56.6 108 34.3
PSO541G5166 Papaver somniferum HOM05D003097 ORTHO05D003437 4.8e-06 55.8 53 47.2
PSO675G5479 Papaver somniferum HOM05D003097 ORTHO05D003437 4.8e-06 55.8 53 47.2
Sed0015022 Sechium edule HOM05D003097 ORTHO05D003437 6.3e-06 55.5 137 28.5
SGA_v2.0_scaffold308G48089 Striga asiatica HOM05D001139 ORTHO05D000936 6.3e-06 55.5 116 32.8
Zm00001eb159750 Zea mays HOM05D003097 ORTHO05D003437 6.3e-06 55.5 75 44.0
Sc03g0003590 Simmondsia chinensis HOM05D003097 ORTHO05D003437 8.2e-06 55.1 80 38.8


User provided reference genes

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