Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.3e-299 1032.3 560 100.0
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.3e-265 917.1 581 89.0
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.3e-222 775.8 595 77.3
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.2e-202 710.3 586 68.1
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.7e-201 706.4 604 66.2
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 4.6e-199 698.4 589 68.1
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.1e-173 614.0 590 62.2
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.3e-166 589.7 563 62.5
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 5.0e-161 572.0 577 58.2
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 2.7e-159 566.2 576 57.3
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.6e-159 565.8 587 56.4
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 8.0e-159 564.7 578 56.1
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.0e-159 564.7 563 61.1
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.8e-158 563.5 590 56.9
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.6e-157 559.7 545 58.9
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.8e-156 555.4 573 58.1
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 5.5e-152 542.0 550 56.7
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 4.7e-151 538.9 570 54.6
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 1.8e-150 537.0 580 54.7
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.0e-149 533.5 581 54.6
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 7.5e-149 531.6 550 55.8
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 9.8e-149 531.2 565 55.4
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 2.8e-148 529.6 589 55.7
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 3.1e-147 526.2 566 55.7
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 9.1e-147 524.6 547 54.7
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.6e-146 523.9 557 53.7
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 5.9e-146 521.9 577 56.0
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.9e-145 519.6 546 55.3
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 3.8e-145 519.2 578 53.8
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.9e-144 516.9 574 53.1
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 5.5e-144 515.4 539 54.2
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.2e-143 514.2 572 53.3
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.6e-143 513.8 570 53.5
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 3.6e-143 512.7 568 52.8
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 8.0e-143 511.5 526 55.1
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.0e-142 511.1 580 53.1
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 3.0e-142 509.6 579 51.6
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 3.0e-142 509.6 582 53.3
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.7e-140 503.8 541 55.3
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.7e-140 503.8 559 52.8
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 3.7e-140 502.7 559 52.6
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 8.3e-140 501.5 590 51.9
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.4e-139 498.8 543 52.9
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.4e-139 498.8 543 52.9
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 3.5e-138 496.1 633 50.6
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.0e-137 494.6 540 52.0
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 5.0e-137 492.3 579 51.1
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.9e-136 490.3 573 52.2
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 7.3e-136 488.4 584 52.6
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.6e-135 487.3 588 50.5
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 2.1e-135 486.9 590 51.9
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.1e-135 486.9 589 50.1
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.1e-135 486.9 568 50.2
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.6e-135 486.1 559 52.2
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 8.0e-135 485.0 574 51.0
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.4e-134 484.2 556 50.2
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.4e-133 479.2 543 52.5
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 9.8e-133 478.0 550 51.8
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.7e-132 477.2 557 50.3
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.7e-132 477.2 569 51.1
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 3.7e-132 476.1 587 48.6
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.4e-131 474.2 541 52.3
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.4e-131 474.2 541 52.3
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.8e-131 473.8 549 51.7
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 6.0e-130 468.8 581 49.7
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 2.3e-129 466.8 578 49.1
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.0e-129 466.5 541 51.9
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 3.9e-129 466.1 578 50.0
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 2.1e-127 460.3 535 50.7
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 3.6e-127 459.5 587 49.9
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 6.2e-127 458.8 585 48.4
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.4e-126 457.6 544 49.6
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 2.3e-126 456.8 550 49.3
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.8e-126 455.3 469 56.7
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 2.0e-125 453.8 566 48.1
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 2.6e-125 453.4 502 53.0
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.3e-124 451.1 579 48.4
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 3.7e-124 449.5 586 48.6
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 3.7e-124 449.5 587 47.9
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.0e-122 443.7 558 48.7
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.5e-122 443.0 556 47.3
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 6.6e-121 438.7 591 45.5
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 8.6e-121 438.3 591 45.9
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-120 438.0 585 45.3
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.5e-120 437.6 580 49.1
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.3e-120 436.4 534 51.9
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 5.6e-120 435.6 582 49.0
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 5.6e-120 435.6 582 49.0
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 5.6e-120 435.6 568 48.2
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 8.1e-119 431.8 387 63.8
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 4.0e-118 429.5 585 46.5
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.8e-118 428.7 581 46.5
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.2e-117 427.9 551 47.9
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 1.5e-117 427.6 537 48.0
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 4.4e-117 426.0 534 48.7
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 9.9e-117 424.9 460 56.1
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.4e-115 420.2 534 47.2
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 3.9e-113 412.9 532 46.6
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.6e-113 412.1 377 61.3
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 8.6e-113 411.8 602 43.5
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 5.6e-112 409.1 459 54.5
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 2.1e-111 407.1 462 52.6
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.4e-110 404.4 366 61.2
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.7e-108 397.5 581 43.7
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 6.4e-108 395.6 549 44.8
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.2e-106 391.3 573 42.6
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 1.6e-106 391.0 588 42.7
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.0e-105 388.3 535 43.9
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.3e-105 387.9 588 42.3
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 2.1e-103 380.6 588 41.7
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 2.8e-103 380.2 544 44.7
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 3.6e-103 379.8 530 43.6
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 6.2e-103 379.0 588 41.3
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 8.1e-103 378.6 567 42.3
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.1e-102 378.3 589 41.6
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 6.9e-102 375.6 573 40.0
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 9.0e-102 375.2 587 41.1
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 2.7e-98 363.6 265 73.6
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 3.0e-97 360.1 439 48.3
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.3e-96 356.7 419 51.6
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 5.3e-94 349.4 606 38.9
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 4.2e-91 339.7 438 47.5
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 2.5e-88 330.5 557 39.3
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.8e-86 324.3 263 65.0
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 4.2e-83 313.2 471 41.6
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.4e-78 297.4 537 36.5
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 6.7e-73 279.3 569 36.0
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.4e-69 266.9 330 49.1
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 8.8e-65 252.3 250 55.6
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 9.7e-64 248.8 386 40.2
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.9e-62 242.7 411 38.4
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.7e-50 203.4 249 43.8
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.5e-48 198.4 530 34.5
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.6e-48 197.6 325 40.0
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.8e-46 191.4 154 71.4
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-45 188.3 243 49.4
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.0e-45 188.0 154 70.1
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 5.0e-44 183.3 396 34.3
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 7.2e-43 179.5 164 62.8
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.4e-38 164.5 260 43.5
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 4.2e-35 153.7 532 26.7
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 1.6e-34 151.8 500 26.4
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 4.7e-34 150.2 163 45.4
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 8.0e-34 149.4 516 26.4
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.0e-32 144.8 158 52.5
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-30 138.3 144 53.5
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 5.9e-29 133.3 162 47.5
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 5.9e-29 133.3 549 26.0
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.7e-28 131.7 224 42.0
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 2.9e-28 131.0 520 25.6
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 5.5e-27 126.7 119 56.3
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.6e-26 125.2 147 46.9
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 2.1e-26 124.8 154 42.9
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.1e-26 123.2 146 46.6
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.0e-25 120.9 104 66.3
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.0e-25 120.6 160 44.4
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 4.4e-24 117.1 119 58.8
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.1e-22 112.5 231 39.4
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.4e-22 111.3 105 58.1
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 3.1e-22 110.9 92 63.0
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 7.0e-22 109.8 95 68.4
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 6.6e-20 103.2 128 52.3
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.1e-18 98.2 134 39.6
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 3.6e-18 97.4 123 41.5
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.0e-18 96.3 84 61.9
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 4.0e-17 94.0 72 66.7
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 5.2e-17 93.6 552 23.0
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 6.4e-15 86.7 443 25.1
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.3e-15 86.3 67 73.1
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.1e-14 84.0 116 44.8
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.4e-14 83.6 65 66.2
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.4e-14 83.6 65 66.2
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 7.8e-13 79.7 68 64.7
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.7e-12 78.6 111 38.7
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 8.6e-12 76.3 111 38.7
Sopen01g047030 Solanum pennellii HOM05D003578 ORTHO05D004021 2.5e-11 74.7 90 52.2
Actinidia17466 Actinidia chinensis HOM05D003578 ORTHO05D004021 9.5e-11 72.8 145 41.4
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 8.0e-10 69.7 143 30.8
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-09 69.3 81 40.7
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 1.4e-09 68.9 84 39.3
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.3e-09 68.2 55 63.6
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 1.3e-07 62.4 254 26.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.4e-06 58.2 67 49.3


User provided reference genes

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