Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.2e-196 688.7 340 100.0
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.6e-186 656.0 339 96.8
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 8.0e-162 573.9 336 83.3
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 1.9e-155 552.7 334 81.7
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.7e-149 532.3 337 77.7
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 2.9e-148 528.9 334 76.0
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 5.0e-148 528.1 334 74.9
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.5e-147 526.6 336 76.5
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 4.2e-147 525.0 334 75.7
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 4.7e-146 521.5 334 74.0
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 6.1e-146 521.2 334 75.4
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 6.1e-146 521.2 334 74.6
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.4e-145 520.0 338 75.1
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 1.2e-144 516.9 330 74.8
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 1.2e-144 516.9 332 74.4
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.5e-144 516.5 334 74.9
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 1.5e-144 516.5 334 73.4
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.5e-144 516.5 333 75.7
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 2.0e-144 516.2 333 73.0
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 3.4e-144 515.4 332 72.9
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 5.7e-144 514.6 336 72.3
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 9.8e-144 513.8 333 74.2
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.3e-143 513.5 333 74.2
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 3.7e-143 511.9 337 73.6
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 3.2e-142 508.8 334 72.2
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 1.6e-141 506.5 333 73.0
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 2.7e-141 505.8 339 72.0
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 3.5e-141 505.4 338 71.3
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 1.3e-140 503.4 339 70.5
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 1.7e-140 503.1 329 74.5
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 3.9e-140 501.9 336 72.6
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 8.6e-140 500.7 325 74.2
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.1e-139 500.4 324 72.8
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 7.3e-139 497.7 338 70.4
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 9.5e-139 497.3 337 71.2
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 2.1e-138 496.1 337 71.2
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.8e-138 495.7 321 73.8
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.7e-138 495.0 321 74.1
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 6.1e-138 494.6 340 67.6
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 6.1e-138 494.6 321 73.8
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.4e-137 493.4 340 69.7
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.8e-137 493.0 334 68.0
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.8e-137 493.0 336 68.2
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 1.8e-137 493.0 325 71.7
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 4.0e-137 491.9 336 71.7
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 5.2e-137 491.5 326 71.2
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 8.9e-137 490.7 334 68.3
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.2e-136 490.3 343 70.3
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.6e-136 489.2 333 70.0
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 9.8e-136 487.3 333 69.1
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 9.8e-136 487.3 325 70.8
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.3e-135 486.9 323 73.1
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.7e-135 485.3 334 70.4
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 3.7e-135 485.3 338 70.1
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 2.4e-134 482.6 317 73.2
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 7.0e-134 481.1 332 71.7
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.6e-133 479.9 321 72.0
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.0e-133 479.6 336 67.9
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.0e-133 479.6 338 70.4
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.7e-133 479.2 332 68.1
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 2.7e-133 479.2 332 67.2
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 4.6e-133 478.4 336 67.9
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 7.8e-133 477.6 336 67.3
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 7.8e-133 477.6 333 67.9
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 1.0e-132 477.2 336 67.9
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.0e-132 477.2 332 67.5
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 3.0e-132 475.7 336 67.3
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.9e-131 473.0 321 69.2
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 6.2e-130 468.0 333 68.5
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 1.4e-129 466.8 321 70.4
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 8.9e-129 464.2 336 66.7
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 1.5e-128 463.4 336 67.0
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.5e-128 463.4 329 69.9
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 7.5e-128 461.1 354 65.8
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 7.5e-128 461.1 336 67.6
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 2.2e-127 459.5 335 64.5
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 6.4e-127 458.0 297 75.4
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 1.1e-126 457.2 339 66.1
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 3.2e-126 455.7 322 68.6
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 4.1e-126 455.3 337 66.2
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 3.0e-124 449.1 324 67.9
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 5.1e-124 448.4 336 64.9
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 8.6e-124 447.6 335 66.9
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 1.1e-123 447.2 396 56.3
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.9e-123 446.4 324 65.4
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 1.9e-123 446.4 349 61.6
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 1.9e-123 446.4 336 63.7
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 3.6e-122 442.2 341 62.5
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.0e-121 438.7 331 65.3
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.2e-121 438.3 331 65.0
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 3.7e-119 432.2 337 62.3
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 8.3e-119 431.0 322 65.8
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.1e-118 430.6 268 78.0
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 5.4e-118 428.3 326 63.2
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.2e-117 427.2 337 61.7
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.3e-116 423.7 266 72.2
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 6.6e-116 421.4 574 44.3
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.1e-114 416.4 271 72.3
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 3.6e-114 415.6 319 63.0
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 6.2e-114 414.8 327 64.2
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 1.1e-113 414.1 340 60.0
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 3.4e-112 409.1 295 67.8
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 3.8e-111 405.6 294 66.0
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 4.9e-111 405.2 336 59.8
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 4.2e-110 402.1 276 68.8
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 4.2e-110 402.1 276 68.8
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 8.7e-108 394.4 325 58.5
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 3.3e-107 392.5 273 66.7
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 5.3e-105 385.2 325 57.8
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 2.6e-104 382.9 301 63.1
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 3.4e-104 382.5 326 59.5
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 5.8e-104 381.7 365 55.3
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 9.3e-102 374.4 238 69.3
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.7e-100 370.2 333 55.9
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 4.3e-99 365.5 347 54.5
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 4.3e-99 365.5 263 67.7
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 9.3e-94 347.8 337 49.9
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 8.7e-92 341.3 256 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 3.8e-87 325.9 313 50.5
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 3.2e-86 322.8 197 77.7
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.7e-85 319.7 204 72.1
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 3.0e-84 316.2 328 47.6
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.1e-78 297.7 341 49.3
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 7.9e-77 291.6 213 71.4
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.3e-76 290.8 199 70.4
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 3.9e-76 289.3 176 77.3
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 8.5e-71 271.6 305 51.1
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 2.8e-66 256.5 304 40.5
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 3.1e-65 253.1 245 50.6
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 5.0e-55 219.2 256 43.8
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 6.5e-55 218.8 163 65.6
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 6.5e-55 218.8 261 44.4
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.9e-54 217.2 194 57.2
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.6e-51 206.8 156 60.9
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 1.1e-49 201.4 214 53.3
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 2.9e-47 193.4 378 31.7
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 6.8e-44 182.2 211 46.9
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 2.0e-43 180.6 209 46.4
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.4e-41 174.5 129 63.6
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.2e-35 154.8 154 50.6
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 9.8e-35 151.8 295 34.6
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 4.1e-33 146.4 80 82.5
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 2.3e-31 140.6 123 56.1
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.9e-26 123.6 93 68.8
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.9e-26 123.6 93 68.8
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 5.6e-22 109.4 120 49.2
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 1.0e-20 105.1 181 36.5
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.3e-15 88.2 57 73.7
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.9e-15 86.7 114 45.6
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 3.9e-15 86.7 48 81.2
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 3.3e-14 83.6 71 54.9
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 2.9e-10 70.5 58 56.9
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 8.3e-10 68.9 46 63.0
CSS0043726 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 3.3e-06 57.0 27 88.9


User provided reference genes

Program Settings